| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g03816 | 1:24,817,159-24,833,117 | - | C1H1g22731 | CX1g004904 | LOC_Os01g48680 | Os01g0678500 | TPC1, OsTPC1, Tpc1, OsCC1 | Detail |
| C2H1g17432 | 1:24,834,344-24,836,347 | + | C1H1g06484 | CX1g001832 | LOC_Os01g48690 | Os01g0678600 | - | Detail |
| C2H1g29587 | 1:24,837,207-24,840,189 | - | C1H1g21202 | CX1g005378 | LOC_Os01g48700 | Os01g0678700 | - | Detail |
| C2H1g22453 | 1:24,843,096-24,846,556 | + | C1H1g29809 | CX1g000800 | - | - | - | Detail |
| C2H1g18621 | 1:24,848,468-24,849,100 | - | C1H1g09148 | CX1g006182 | LOC_Os01g48710 | Os01g0678800 | - | Detail |
| C2H1g02873 | 1:24,857,342-24,865,949 | + | C1H1g01369 | CX1g006519 | LOC_Os01g48720 | Os01g0679000 | - | Detail |
| C2H1g10975 | 1:24,874,515-24,879,080 | + | C1H1g09308 | CX1g004313 | LOC_Os01g48750 | Os01g0679550 | - | Detail |
| C2H1g25010 | 1:24,880,657-24,884,018 | + | C1H1g00895 | CX1g003619 | LOC_Os01g48760 | Os01g0679600 | - | Detail |
| C2H1g04367 | 1:24,884,811-24,887,061 | - | - | CX1g000487 | LOC_Os01g48770 | Os01g0679700 | - | Detail |
| C2H1g01242 | 1:24,898,075-24,904,856 | + | C1H1g15404 | CX1g003718 | LOC_Os01g48790 | Os01g0679900 | - | Detail |
| C2H1g04425 | 1:24,898,169-24,898,621 | - | - | - | - | Os01g0680000 | - | Detail |
| C2H1g18628 | 1:24,914,327-24,915,487 | + | C1H1g14743 | CX1g004327 | LOC_Os01g48800 | Os01g0680200 | OsPUP4, BG3/OsPUP4, BG3 | Detail |
| C2H1g11263 | 1:24,914,489-24,915,503 | - | - | - | - | Os01g0680100 | - | Detail |
| C2H1g09841 | 1:24,929,361-24,932,397 | + | C1H1g08166 | CX1g006918 | LOC_Os01g48810 | Os01g0680400 | - | Detail |
| C2H1g14175 | 1:24,937,054-24,937,968 | + | C1H1g07424 | CX1g002655 | LOC_Os01g48820 | Os01g0680600 | - | Detail |
| C2H1g22016 | 1:24,941,731-24,946,829 | - | C1H1g15834 | CX1g002522 | LOC_Os01g48830 | Os01g0680700 | - | Detail |
| C2H1g19155 | 1:24,955,834-24,959,326 | + | - | - | - | Os01g0680950 | - | Detail |
| C2H1g29263 | 1:24,956,786-24,959,385 | - | C1H1g17992 | CX1g007143 | LOC_Os01g48850 | Os01g0680900 | - | Detail |
| C2H1g05013 | 1:24,961,070-24,966,730 | - | C1H1g20689 | CX1g002388 | LOC_Os01g48874 | Os01g0681000 | - | Detail |
| C2H1g04783 | 1:24,969,619-24,970,164 | + | - | CX6g041804 | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g041112 | 5:13,517,253-13,517,946 | + | C1H5g26235 | C2H5g25283 | LOC_Os05g27980 | Os05g0346800 | - | Detail |
| CX5g037334 | 5:13,522,017-13,528,607 | + | C1H5g30238 | C2H5g25338 | LOC_Os05g27960 | Os05g0346500 | Endo-Os | Detail |
| CX5g037807 | 5:13,531,616-13,535,943 | - | C1H5g26042 | C2H5g21564 | LOC_Os05g27950 | Os05g0346400 | - | Detail |
| CX5g037658 | 5:13,537,230-13,539,187 | + | C1H5g02425 | C2H5g17547 | LOC_Os05g27940 | Os05g0346300 | - | Detail |
| CX5g041046 | 5:13,541,834-13,544,726 | + | C1H5g00367 | C2H5g29783 | LOC_Os05g27930 | Os05g0346200 | OsDREB2B | Detail |
| CX5g039687 | 5:13,546,910-13,553,656 | - | C1H5g21070 | C2H5g22054 | LOC_Os05g27920 | Os05g0346100 | - | Detail |
| CX5g040949 | 5:13,554,515-13,554,820 | - | - | - | - | - | - | Detail |
| CX5g039960 | 5:13,567,424-13,570,067 | + | C1H5g30213 | C2H5g22004 | LOC_Os05g27890 | Os05g0345700 | - | Detail |
| CX5g038275 | 5:13,574,978-13,579,321 | + | C1H5g11256 | C2H5g05395 | LOC_Os05g27880 | Os05g0345500 | - | Detail |
| CX5g039058 | 5:13,582,453-13,594,243 | + | C1H5g03976 | C2H5g03667 | LOC_Os05g27870 | Os05g0345400 | - | Detail |
| CX5g038342 | 5:13,624,184-13,624,357 | + | - | - | - | Os02g0188201 | - | Detail |
| CX5g039779 | 5:13,625,558-13,625,722 | + | - | - | LOC_Os11g38890 | - | - | Detail |
| CX5g038888 | 5:13,627,962-13,632,057 | - | C1H5g26971 | C2H5g28639 | LOC_Os05g27820 | Os05g0345100 | OsSec14-14 | Detail |
| CX5g040009 | 5:13,639,991-13,640,236 | + | C1H5g20093 | C2H5g21838 | - | Os05g0498366 | - | Detail |
| CX5g040808 | 5:13,658,700-13,661,205 | + | C1H5g06134 | C2H5g26086 | LOC_Os05g27790 | Os05g0344400 | - | Detail |
| CX5g038186 | 5:13,669,175-13,669,699 | + | C1H5g08501 | C2H5g20870 | LOC_Os05g27780 | Os05g0344200 | - | Detail |
| CX5g040177 | 5:13,688,964-13,689,143 | + | C1H12g29429 | C2H12g12031 | LOC_Os01g39980 | - | - | Detail |
| CX5g038820 | 5:13,692,954-13,693,442 | + | - | - | - | Os11g0558566 | - | Detail |
| CX5g038977 | 5:13,707,942-13,718,382 | - | C1H5g17654 | C2H5g21735 | LOC_Os05g28180 | Os05g0349200 | - | Detail |
| CX5g041075 | 5:13,722,170-13,722,328 | - | - | - | - | - | - | Detail |