| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g09266 | 3:4,904,852-4,911,840 | + | C2H3g01278 | CX3g028760 | LOC_Os03g10780 | Os03g0205400 | - | Detail |
| C1H3g14529 | 3:4,913,544-4,918,530 | + | C2H3g28949 | CX3g029451 | LOC_Os03g10790 | Os03g0205500 | - | Detail |
| C1H3g24511 | 3:4,926,401-4,931,763 | + | C2H3g29987 | CX3g026705 | LOC_Os03g10800 | Os03g0205700 | - | Detail |
| C1H3g03568 | 3:4,936,763-4,938,229 | - | C2H3g05398 | CX3g029670 | LOC_Os03g10810 | Os03g0205800 | HHC3 | Detail |
| C1H3g13621 | 3:4,944,752-4,960,655 | - | C2H3g12127 | CX3g029010 | LOC_Os03g10820 | Os03g0762900 | - | Detail |
| C1H3g08320 | 3:4,965,861-4,966,886 | - | C2H3g24955 | CX3g025706 | - | Os03g0206201 | - | Detail |
| C1H3g31074 | 3:4,967,476-4,970,809 | - | - | - | - | - | - | Detail |
| C1H3g09000 | 3:4,977,714-4,978,093 | - | C2H3g09566 | CX3g025152 | LOC_Os03g10860 | Os03g0206400 | - | Detail |
| C1H3g23004 | 3:4,983,859-4,986,330 | + | C2H3g30671 | CX3g025216 | LOC_Os03g10870 | Os03g0206600 | - | Detail |
| C1H3g06410 | 3:4,987,578-4,990,347 | - | C2H3g08057 | CX3g028250 | LOC_Os03g10880 | Os03g0206700 | - | Detail |
| C1H3g27718 | 3:4,991,983-4,994,469 | + | C2H3g20915 | CX3g028910 | LOC_Os03g10890 | Os03g0206900 | - | Detail |
| C1H3g00893 | 3:5,011,803-5,014,766 | - | C2H3g10611 | CX3g026802 | LOC_Os03g10920 | Os03g0207200 | - | Detail |
| C1H3g01133 | 3:5,015,624-5,017,577 | - | C2H3g21091 | CX3g025332 | LOC_Os03g10930 | Os03g0207250 | - | Detail |
| C1H3g28849 | 3:5,018,053-5,022,776 | - | C2H3g16402 | CX3g026481 | LOC_Os03g10940 | Os03g0207300 | - | Detail |
| C1H3g06136 | 3:5,031,090-5,032,849 | + | C2H3g22551 | CX3g026300 | LOC_Os03g10950 | Os03g0207400 | - | Detail |
| C1H3g30385 | 3:5,036,888-5,039,139 | + | C2H3g27737 | CX3g028734 | LOC_Os03g10980 | Os03g0207800 | - | Detail |
| C1H3g09911 | 3:5,041,620-5,045,541 | - | C2H3g03380 | CX3g029045 | LOC_Os03g10990 | Os03g0207900 | - | Detail |
| C1H3g06609 | 3:5,046,661-5,050,805 | - | C2H3g00163 | CX3g026306 | LOC_Os03g11010 | Os03g0208500 | NRAMP2, OsNramp2, OsNRAMP2 | Detail |
| C1H3g30012 | 3:5,065,565-5,067,157 | + | C2H3g10069 | CX3g026296 | LOC_Os03g11020 | Os03g0208600 | - | Detail |
| C1H3g13525 | 3:5,069,353-5,072,403 | + | C2H3g05594 | CX3g026122 | LOC_Os03g11030 | Os03g0208700 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g041112 | 5:13,517,253-13,517,946 | + | C1H5g26235 | C2H5g25283 | LOC_Os05g27980 | Os05g0346800 | - | Detail |
| CX5g037334 | 5:13,522,017-13,528,607 | + | C1H5g30238 | C2H5g25338 | LOC_Os05g27960 | Os05g0346500 | Endo-Os | Detail |
| CX5g037807 | 5:13,531,616-13,535,943 | - | C1H5g26042 | C2H5g21564 | LOC_Os05g27950 | Os05g0346400 | - | Detail |
| CX5g037658 | 5:13,537,230-13,539,187 | + | C1H5g02425 | C2H5g17547 | LOC_Os05g27940 | Os05g0346300 | - | Detail |
| CX5g041046 | 5:13,541,834-13,544,726 | + | C1H5g00367 | C2H5g29783 | LOC_Os05g27930 | Os05g0346200 | OsDREB2B | Detail |
| CX5g039687 | 5:13,546,910-13,553,656 | - | C1H5g21070 | C2H5g22054 | LOC_Os05g27920 | Os05g0346100 | - | Detail |
| CX5g040949 | 5:13,554,515-13,554,820 | - | - | - | - | - | - | Detail |
| CX5g039960 | 5:13,567,424-13,570,067 | + | C1H5g30213 | C2H5g22004 | LOC_Os05g27890 | Os05g0345700 | - | Detail |
| CX5g038275 | 5:13,574,978-13,579,321 | + | C1H5g11256 | C2H5g05395 | LOC_Os05g27880 | Os05g0345500 | - | Detail |
| CX5g039058 | 5:13,582,453-13,594,243 | + | C1H5g03976 | C2H5g03667 | LOC_Os05g27870 | Os05g0345400 | - | Detail |
| CX5g038342 | 5:13,624,184-13,624,357 | + | - | - | - | Os02g0188201 | - | Detail |
| CX5g039779 | 5:13,625,558-13,625,722 | + | - | - | LOC_Os11g38890 | - | - | Detail |
| CX5g038888 | 5:13,627,962-13,632,057 | - | C1H5g26971 | C2H5g28639 | LOC_Os05g27820 | Os05g0345100 | OsSec14-14 | Detail |
| CX5g040009 | 5:13,639,991-13,640,236 | + | C1H5g20093 | C2H5g21838 | - | Os05g0498366 | - | Detail |
| CX5g040808 | 5:13,658,700-13,661,205 | + | C1H5g06134 | C2H5g26086 | LOC_Os05g27790 | Os05g0344400 | - | Detail |
| CX5g038186 | 5:13,669,175-13,669,699 | + | C1H5g08501 | C2H5g20870 | LOC_Os05g27780 | Os05g0344200 | - | Detail |
| CX5g040177 | 5:13,688,964-13,689,143 | + | C1H12g29429 | C2H12g12031 | LOC_Os01g39980 | - | - | Detail |
| CX5g038820 | 5:13,692,954-13,693,442 | + | - | - | - | Os11g0558566 | - | Detail |
| CX5g038977 | 5:13,707,942-13,718,382 | - | C1H5g17654 | C2H5g21735 | LOC_Os05g28180 | Os05g0349200 | - | Detail |
| CX5g041075 | 5:13,722,170-13,722,328 | - | - | - | - | - | - | Detail |