| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g21861 | 1:32,584,401-32,588,189 | + | C2H1g03435 | CX1g004784 | LOC_Os01g63420 | Os01g0853400 | OsCOI1a, OsCOI1, Os_F0728 | Detail |
| C1H1g01084 | 1:32,595,967-32,596,413 | + | C2H1g21411 | CX1g005287 | - | - | - | Detail |
| C1H1g22221 | 1:32,598,743-32,600,421 | - | C2H1g02642 | CX1g001449 | LOC_Os01g63460 | Os01g0853700 | - | Detail |
| C1H1g01372 | 1:32,605,722-32,606,705 | + | - | CX1g000120 | LOC_Os01g63470 | Os01g0853800 | - | Detail |
| C1H1g16925 | 1:32,626,638-32,628,089 | + | C2H1g23760 | CX1g000832 | LOC_Os01g63480 | Os01g0854000 | - | Detail |
| C1H1g13840 | 1:32,637,580-32,637,996 | + | - | CX1g007164 | LOC_Os01g63500 | Os01g0854400 | - | Detail |
| C1H1g30766 | 1:32,643,690-32,644,390 | - | C2H1g15087 | CX1g000677 | LOC_Os01g63510 | Os01g0854500 | QHB | Detail |
| C1H1g14296 | 1:32,652,785-32,654,422 | + | C2H1g13017 | CX1g004974 | LOC_Os01g63540 | Os01g0854800 | OsCYP86A9 | Detail |
| C1H1g06653 | 1:32,656,012-32,659,317 | - | C2H1g11964 | CX1g000343 | LOC_Os01g63580 | Os01g0855000 | - | Detail |
| C1H1g12873 | 1:32,677,253-32,679,894 | + | C2H1g27825 | CX1g005974 | LOC_Os01g63620 | Os01g0855200 | - | Detail |
| C1H1g14003 | 1:32,694,266-32,696,395 | + | C2H1g08166 | CX1g003617 | LOC_Os01g63680 | Os01g0855400 | Os2R_MYB17 | Detail |
| C1H1g30734 | 1:32,699,757-32,701,181 | - | - | CX1g004624 | LOC_Os01g63690 | Os01g0855600 | - | Detail |
| C1H1g14553 | 1:32,707,902-32,711,602 | + | C2H1g04964 | CX1g004920 | LOC_Os01g63710 | Os01g0856000 | - | Detail |
| C1H1g19008 | 1:32,740,280-32,746,644 | + | C2H1g15998 | CX1g001894 | LOC_Os01g63770 | Os01g0856500 | - | Detail |
| C1H1g09781 | 1:32,748,069-32,755,499 | - | C2H1g00745 | CX1g000142 | LOC_Os01g63780 | Os01g0856600 | - | Detail |
| C1H1g00466 | 1:32,757,991-32,758,467 | + | C2H5g12625 | CX1g001837 | LOC_Os01g63800 | Os01g0856800 | - | Detail |
| C1H1g21752 | 1:32,761,915-32,763,335 | + | C2H1g08502 | CX1g000133 | LOC_Os01g63810 | Os01g0856900 | SBDCP1 | Detail |
| C1H1g03217 | 1:32,763,720-32,771,691 | - | C2H1g12263 | CX1g007132 | LOC_Os01g63820 | Os01g0857000 | - | Detail |
| C1H1g17452 | 1:32,774,455-32,775,804 | - | C2H1g17962 | CX1g006058 | LOC_Os01g63830 | Os01g0857200 | - | Detail |
| C1H1g18078 | 1:32,777,706-32,781,386 | - | C2H1g17753 | CX1g002484 | LOC_Os01g63840 | Os01g0857300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g037484 | 5:11,853,530-11,855,359 | - | C1H5g04494 | C2H5g17111 | LOC_Os05g24560 | Os05g0310600 | - | Detail |
| CX5g038686 | 5:11,858,740-11,859,357 | - | - | - | LOC_Os05g24570 | - | - | Detail |
| CX5g040547 | 5:11,861,887-11,869,526 | + | C1H5g26249 | C2H5g23044 | LOC_Os05g24580 | Os05g0310750 | - | Detail |
| CX5g040019 | 5:11,873,379-11,877,507 | + | C1H5g13473 | C2H5g15821 | LOC_Os05g24601 | Os05g0310800 | - | Detail |
| CX5g037996 | 5:11,881,892-11,887,866 | + | C1H5g24769 | C2H5g25624 | LOC_Os05g24601 | Os05g0311000 | - | Detail |
| CX5g038390 | 5:11,902,164-11,902,760 | + | - | C2H10g11516 | - | - | - | Detail |
| CX5g040254 | 5:11,908,375-11,908,527 | - | - | - | - | - | - | Detail |
| CX5g036740 | 5:11,917,760-11,921,445 | - | - | C2H5g11879 | LOC_Os05g25170 | - | - | Detail |
| CX5g037701 | 5:11,928,639-11,929,399 | + | C1H5g28483 | C2H5g00350 | LOC_Os05g24650 | Os05g0311500 | - | Detail |
| CX5g041079 | 5:11,941,754-11,942,791 | - | C1H5g04420 | C2H5g30187 | LOC_Os05g24660 | Os05g0311801 | - | Detail |
| CX5g040887 | 5:11,960,285-11,972,948 | - | C1H5g19973 | C2H5g01545 | LOC_Os05g24684 | Os05g0312000 | SPL40 | Detail |
| CX5g038506 | 5:11,986,585-11,987,294 | + | - | - | LOC_Os05g25600 | - | - | Detail |
| CX5g039273 | 5:11,993,593-11,994,240 | + | C1H5g11883 | C2H5g02533 | LOC_Os05g24760 | Os05g0482501 | - | Detail |
| CX5g037289 | 5:11,994,870-11,997,408 | - | C1H5g11619 | C2H5g12302 | LOC_Os05g24770 | Os05g0312500 | - | Detail |
| CX5g037428 | 5:11,999,410-12,000,141 | + | - | - | - | - | - | Detail |
| CX5g039271 | 5:12,018,614-12,024,254 | + | C1H5g25693 | C2H5g00579 | LOC_Os05g24880 | Os05g0313500 | - | Detail |
| CX5g039346 | 5:12,025,500-12,026,941 | + | C1H5g14999 | C2H5g28956 | LOC_Os05g24890 | Os05g0313600 | - | Detail |
| CX5g038570 | 5:12,028,050-12,029,834 | - | C1H5g19700 | C2H5g27404 | LOC_Os05g24900 | Os05g0313700 | - | Detail |
| CX5g040897 | 5:12,034,750-12,035,238 | - | C1H5g14342 | C2H5g08606 | - | Os05g0313900 | - | Detail |
| CX5g038966 | 5:12,035,253-12,039,271 | - | C1H5g14342 | C2H5g09680 | LOC_Os05g24930 | Os05g0583950 | - | Detail |