| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g30584 | 4:28,108,742-28,112,572 | + | C2H4g15888 | CX4g036083 | LOC_Os04g53930 | Os04g0631100 | - | Detail |
| C1H4g13315 | 4:28,117,318-28,119,085 | + | C2H4g16028 | CX4g032189 | LOC_Os04g53950 | Os04g0604300 | - | Detail |
| C1H4g05962 | 4:28,134,381-28,136,928 | + | C2H4g23895 | CX4g032512 | LOC_Os04g53990 | Os04g0631600 | OsbHLH068 | Detail |
| C1H4g04717 | 4:28,140,905-28,145,455 | - | C2H4g25252 | CX9g057667 | LOC_Os04g53994 | Os04g0631800 | SDK6 | Detail |
| C1H4g20208 | 4:28,148,168-28,150,301 | - | C2H4g00649 | - | LOC_Os04g53998 | Os04g0632100 | SDK7 | Detail |
| C1H4g03233 | 4:28,150,520-28,152,646 | - | C2H4g00002 | - | LOC_Os04g53998 | Os04g0632100 | SDK7 | Detail |
| C1H4g18088 | 4:28,154,495-28,155,025 | + | C2H4g00097 | - | - | - | - | Detail |
| C1H4g19935 | 4:28,155,254-28,158,482 | - | C2H4g25653 | - | LOC_Os04g53996 | Os04g0632300 | - | Detail |
| C1H4g25547 | 4:28,166,979-28,170,224 | - | C2H4g11451 | - | LOC_Os04g54002 | Os04g0632500 | SDRLK-30 | Detail |
| C1H4g31127 | 4:28,170,948-28,173,994 | - | C2H4g07076 | - | LOC_Os04g54010 | Os04g0632600 | SDRLK-71, OsPLIM2b | Detail |
| C1H4g07808 | 4:28,174,669-28,177,718 | - | C2H4g24371 | CX4g031597 | LOC_Os04g54120 | Os04g0633800 | SDK9 | Detail |
| C1H4g10768 | 4:28,180,604-28,185,432 | - | C2H4g10316 | - | LOC_Os04g54020 | Os04g0632901 | SDK8 | Detail |
| C1H4g17762 | 4:28,188,767-28,190,699 | - | C2H4g11371 | CX9g057667 | LOC_Os04g54070 | Os04g0633200 | SDRLK-53 | Detail |
| C1H4g25992 | 4:28,190,783-28,192,532 | - | C2H4g11371 | - | LOC_Os04g54070 | Os04g0633200 | SDRLK-53 | Detail |
| C1H4g22937 | 4:28,194,517-28,197,525 | - | C2H4g08151 | - | LOC_Os04g54080 | Os04g0633300 | SDRLK-54 | Detail |
| C1H4g30209 | 4:28,208,773-28,211,940 | - | C2H4g25413 | - | LOC_Os04g54110 | Os04g0633600 | SDK14 | Detail |
| C1H4g27111 | 4:28,217,114-28,220,128 | - | C2H4g16118 | CX4g031597 | LOC_Os04g54120 | Os04g0633800 | SDK9 | Detail |
| C1H4g17491 | 4:28,220,901-28,222,200 | - | C2H4g20208 | - | LOC_Os04g54130 | Os04g0633900 | SDRLK-31 | Detail |
| C1H4g01666 | 4:28,223,239-28,225,052 | - | C2H4g27225 | - | LOC_Os04g54130 | Os04g0633900 | SDRLK-31 | Detail |
| C1H4g16811 | 4:28,226,254-28,227,163 | - | C2H4g05742 | - | LOC_Os04g54140 | Os04g0634000 | SDRLK-32 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g040674 | 5:11,359,074-11,359,295 | + | - | - | - | - | - | Detail |
| CX5g038824 | 5:11,364,147-11,364,558 | + | C1H5g08150 | C2H5g00677 | - | Os05g0482400 | EUI1, eui1, GA16, 17ox, CYP714D1, EUI, CYP714D1/EUI, LG5 | Detail |
| CX5g039125 | 5:11,364,586-11,365,134 | - | - | - | - | - | - | Detail |
| CX5g038913 | 5:11,369,432-11,369,656 | - | - | - | - | - | - | Detail |
| CX5g039051 | 5:11,371,989-11,372,591 | - | - | C2H5g01000 | - | - | - | Detail |
| CX5g039379 | 5:11,379,627-11,380,055 | - | - | - | - | - | - | Detail |
| CX5g037400 | 5:11,394,936-11,395,343 | + | C1H5g23960 | C2H5g13191 | LOC_Os05g23470 | Os05g0299700 | - | Detail |
| CX5g041087 | 5:11,409,233-11,410,803 | + | C1H5g16907 | C2H5g29124 | LOC_Os05g23450 | Os05g0125600 | - | Detail |
| CX5g039100 | 5:11,413,507-11,418,103 | - | C1H5g10724 | C2H5g22808 | LOC_Os05g23440 | Os05g0299500 | - | Detail |
| CX5g039656 | 5:11,420,027-11,420,320 | - | - | - | LOC_Os05g23680 | - | - | Detail |
| CX5g040785 | 5:11,421,518-11,421,667 | + | - | - | - | - | - | Detail |
| CX5g037270 | 5:11,431,706-11,436,577 | + | C1H5g22140 | C2H5g10787 | LOC_Os05g23430 | Os05g0299300 | - | Detail |
| CX5g037770 | 5:11,438,865-11,443,903 | + | C1H5g26259 | C2H5g08398 | LOC_Os05g23420 | Os05g0299200 | - | Detail |
| CX5g037566 | 5:11,448,132-11,448,362 | + | - | - | - | Os05g0299101 | - | Detail |
| CX5g038267 | 5:11,449,048-11,449,257 | + | - | - | - | - | - | Detail |
| CX5g039540 | 5:11,454,641-11,456,749 | + | C1H5g16206 | C2H5g16507 | LOC_Os05g23840 | Os05g0304100 | - | Detail |
| CX5g038810 | 5:11,461,412-11,465,919 | + | C1H5g08335 | C2H5g25548 | LOC_Os05g23860 | Os05g0304400 | OsGDI2 | Detail |
| CX5g039261 | 5:11,473,536-11,478,576 | + | C1H5g06395 | C2H5g22505 | LOC_Os05g23880 | Os05g0304600 | - | Detail |
| CX5g037017 | 5:11,503,870-11,510,714 | - | C1H5g01632 | C2H5g01064 | LOC_Os05g23924 | Os05g0304900 | - | Detail |
| CX5g038283 | 5:11,524,433-11,532,890 | + | C1H5g22159 | C2H5g30014 | LOC_Os05g23940 | Os05g0305100 | - | Detail |