| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g23223 | 4:28,886,893-28,888,704 | - | C2H4g09445 | CX4g034578 | LOC_Os04g55660 | Os04g0650200 | - | Detail |
| C1H4g17876 | 4:28,890,428-28,893,741 | - | C2H4g25070 | CX4g035022 | LOC_Os04g55670 | Os04g0650300 | OsGT43I | Detail |
| C1H4g20767 | 4:28,902,933-28,905,100 | + | C2H4g30089 | CX4g032417 | LOC_Os04g55690 | Os04g0650500 | - | Detail |
| C1H4g29586 | 4:28,905,682-28,908,672 | - | C2H4g16279 | CX4g034904 | LOC_Os04g55700 | Os04g0650600 | - | Detail |
| C1H4g11243 | 4:28,917,746-28,920,513 | + | C2H4g25286 | CX4g032420 | LOC_Os04g55710 | Os04g0650700 | - | Detail |
| C1H4g03632 | 4:28,923,444-28,926,328 | + | C2H4g06390 | CX4g033907 | LOC_Os04g55720 | Os04g0650800 | - | Detail |
| C1H4g09395 | 4:28,926,645-28,935,930 | - | C2H4g14659 | CX4g033850 | LOC_Os04g55730 | Os04g0650900 | - | Detail |
| C1H4g15692 | 4:28,936,703-28,938,087 | - | C2H4g14244 | CX4g032222 | LOC_Os04g55740 | Os04g0651000 | - | Detail |
| C1H4g22868 | 4:28,955,508-28,956,195 | - | C2H4g04267 | CX4g035054 | LOC_Os04g55770 | Os04g0651600 | - | Detail |
| C1H4g05341 | 4:28,970,679-28,976,005 | - | C2H4g03455 | CX4g033402 | LOC_Os04g55800 | Os04g0652400 | - | Detail |
| C1H4g19231 | 4:28,983,671-28,988,052 | - | C2H4g29917 | CX4g035476 | LOC_Os04g55810 | Os04g0652500 | - | Detail |
| C1H4g21279 | 4:28,989,422-28,995,418 | + | C2H4g13053 | CX4g034733 | LOC_Os04g55840 | Os04g0652600 | - | Detail |
| C1H4g27223 | 4:28,997,336-28,997,747 | + | C2H4g17182 | CX4g032019 | LOC_Os04g55850 | Os04g0652700 | - | Detail |
| C1H4g01148 | 4:28,998,741-28,999,789 | + | C2H4g24107 | CX4g034882 | LOC_Os04g55850 | Os04g0652700 | - | Detail |
| C1H4g09382 | 4:29,001,265-29,003,398 | - | C2H4g15013 | CX4g035227 | LOC_Os04g55860 | Os04g0652900 | - | Detail |
| C1H4g27108 | 4:29,020,871-29,025,229 | + | C2H4g11780 | CX4g034020 | LOC_Os04g55920 | Os04g0653000 | EG2, OsTIFY3, OsJAZ10, OsJAZ 1, OsJAZ1, EG2/OsJAZ1, JAZ1/EG2 | Detail |
| C1H4g20973 | 4:29,025,750-29,027,749 | - | C2H4g28993 | CX4g036062 | LOC_Os04g55930 | Os04g0653100 | - | Detail |
| C1H4g27383 | 4:29,029,408-29,033,885 | + | C2H4g12547 | CX4g034519 | LOC_Os04g55940 | Os04g0653200 | OsCAX3 | Detail |
| C1H4g14097 | 4:29,040,501-29,040,941 | + | C2H4g01169 | - | LOC_Os04g55950 | Os04g0653300 | - | Detail |
| C1H4g13362 | 4:29,045,146-29,051,205 | + | C2H4g18627 | CX4g033116 | LOC_Os04g55960 | Os04g0653400 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g040925 | 5:8,518,204-8,518,536 | + | - | - | - | - | - | Detail |
| CX5g038524 | 5:8,520,204-8,521,597 | - | C1H5g01079 | C2H5g25305 | LOC_Os05g18660 | Os05g0269100 | - | Detail |
| CX5g037775 | 5:8,524,614-8,525,020 | - | - | - | - | - | - | Detail |
| CX5g038079 | 5:8,528,207-8,528,356 | + | - | - | LOC_Os05g19540 | - | - | Detail |
| CX5g037457 | 5:8,531,152-8,533,452 | - | C1H5g00417 | C2H5g16000 | LOC_Os05g18670 | Os05g0269200 | - | Detail |
| CX5g039610 | 5:8,564,542-8,571,234 | - | C1H5g29345 | C2H5g09440 | LOC_Os05g18730 | Os05g0269500 | OsGCS1, HAP2 | Detail |
| CX5g037784 | 5:8,572,075-8,572,353 | + | C1H9g27267 | C2H9g03510 | LOC_Os10g36750 | Os10g0511300 | - | Detail |
| CX5g040303 | 5:8,586,975-8,588,666 | - | C1H5g06392 | C2H5g01291 | LOC_Os05g19110 | Os05g0273500 | - | Detail |
| CX5g040250 | 5:8,596,735-8,599,475 | + | C1H5g19255 | C2H5g27387 | LOC_Os05g19040 | Os05g0272900 | - | Detail |
| CX5g040752 | 5:8,601,189-8,604,338 | - | C1H5g00223 | C2H5g24419 | LOC_Os05g19030 | Os05g0272800 | - | Detail |
| CX5g040554 | 5:8,615,470-8,617,764 | - | C1H5g23932 | C2H5g02457 | LOC_Os05g19000 | Os05g0272200 | - | Detail |
| CX5g039881 | 5:8,628,384-8,629,874 | - | C1H5g16929 | C2H5g29689 | LOC_Os05g18950 | Os05g0271900 | - | Detail |
| CX5g040330 | 5:8,661,301-8,661,456 | + | - | - | - | - | - | Detail |
| CX5g039511 | 5:8,664,920-8,667,325 | - | C1H5g29933 | C2H5g04829 | LOC_Os05g18850 | Os05g0271300 | - | Detail |
| CX5g040978 | 5:8,673,509-8,674,237 | - | - | C2H5g21872 | - | - | - | Detail |
| CX5g038671 | 5:8,685,841-8,686,320 | - | - | - | - | - | - | Detail |
| CX5g038323 | 5:8,708,142-8,708,723 | - | - | - | - | - | - | Detail |
| CX5g040477 | 5:8,715,874-8,716,200 | - | - | - | - | - | - | Detail |
| CX5g041096 | 5:8,771,337-8,771,504 | + | - | - | - | Os11g0691190 | - | Detail |
| CX5g037036 | 5:8,822,792-8,823,142 | - | C1H5g03131 | C2H5g14391 | LOC_Os05g18950 | Os05g0370000 | - | Detail |