| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g23944 | 4:16,948,562-16,950,526 | + | C2H4g00787 | CX4g031977 | LOC_Os04g32580 | Os04g0397400 | - | Detail |
| C1H4g13851 | 4:16,951,185-16,953,815 | - | C2H4g00959 | CX4g033053 | LOC_Os04g32590 | Os04g0397500 | - | Detail |
| C1H4g24982 | 4:16,962,428-16,964,379 | + | C2H4g24848 | - | LOC_Os04g32600 | Os04g0397700 | - | Detail |
| C1H4g01528 | 4:16,979,852-16,982,078 | + | C2H4g18306 | CX4g032640 | LOC_Os04g32620 | Os04g0398000 | - | Detail |
| C1H4g13821 | 4:17,005,481-17,010,588 | + | C2H4g26614 | CX4g036075 | LOC_Os04g32650 | Os04g0398300 | OsGlyRS1 | Detail |
| C1H4g05012 | 4:17,011,224-17,013,460 | + | C2H4g16415 | CX4g032937 | LOC_Os04g32660 | Os04g0398500 | - | Detail |
| C1H4g28546 | 4:17,016,233-17,019,038 | + | C2H4g00377 | CX4g033047 | LOC_Os04g32670 | Os04g0398600 | - | Detail |
| C1H4g21316 | 4:17,019,324-17,020,013 | - | C2H4g14149 | CX4g032973 | LOC_Os04g32680 | Os04g0398700 | - | Detail |
| C1H4g20511 | 4:17,021,362-17,035,943 | - | C2H4g19288 | CX4g032900 | LOC_Os04g32690 | Os04g0398800 | - | Detail |
| C1H4g07845 | 4:17,039,341-17,040,395 | + | C2H4g10637 | CX4g032898 | LOC_Os04g32710 | Os04g0399000 | - | Detail |
| C1H4g26028 | 4:17,048,817-17,052,140 | + | C2H4g00186 | CX4g035881 | LOC_Os04g32740 | Os04g0399300 | - | Detail |
| C1H4g21348 | 4:17,081,537-17,084,399 | - | C2H4g03270 | - | LOC_Os04g32800 | Os04g0400000 | - | Detail |
| C1H4g06656 | 4:17,085,121-17,085,886 | - | C2H4g06368 | - | - | Os04g0400000 | - | Detail |
| C1H4g27942 | 4:17,087,688-17,089,136 | - | C2H4g21932 | - | - | Os04g0572100 | - | Detail |
| C1H4g05223 | 4:17,114,709-17,116,191 | - | C2H4g02618 | - | LOC_Os04g32810 | Os04g0400000 | - | Detail |
| C1H4g21891 | 4:17,121,377-17,122,290 | - | C2H4g22891 | - | LOC_Os04g32820 | Os04g0400700 | - | Detail |
| C1H4g02047 | 4:17,123,933-17,124,754 | - | C2H4g07833 | - | LOC_Os04g32830 | Os04g0400700 | - | Detail |
| C1H4g29317 | 4:17,128,693-17,129,760 | - | C2H4g00763 | - | LOC_Os04g32840 | Os04g0400800 | - | Detail |
| C1H4g17092 | 4:17,135,472-17,137,245 | - | C2H4g16334 | - | LOC_Os04g32850 | Os04g0401000 | - | Detail |
| C1H4g28791 | 4:17,143,681-17,144,321 | - | C2H4g26185 | - | LOC_Os04g32860 | Os04g0401100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g006834 | 1:1,644,946-1,646,070 | + | - | - | - | Os01g0136850 | - | Detail |
| CX1g001331 | 1:1,703,831-1,706,326 | + | C1H1g28723 | C2H1g23235 | LOC_Os01g04590 | Os01g0138500 | - | Detail |
| CX1g005618 | 1:1,708,265-1,710,332 | - | C1H1g11863 | C2H1g03427 | LOC_Os01g04600 | Os01g0138600 | - | Detail |
| CX1g001796 | 1:1,716,427-1,717,916 | + | C1H1g20656 | C2H1g25783 | - | Os01g0138800 | - | Detail |
| CX1g006542 | 1:1,719,995-1,722,627 | - | C1H1g06342 | C2H1g07061 | LOC_Os01g04630 | Os01g0138900 | - | Detail |
| CX1g003275 | 1:1,724,767-1,725,968 | + | C1H1g11652 | C2H1g27844 | LOC_Os01g04640 | Os01g0139000 | - | Detail |
| CX1g001840 | 1:1,730,017-1,732,137 | - | C1H1g00241 | C2H1g05789 | LOC_Os01g04650 | Os01g0139200 | - | Detail |
| CX1g002711 | 1:1,742,271-1,743,883 | + | C1H1g05122 | - | LOC_Os01g04660 | Os01g0139600 | - | Detail |
| CX1g005592 | 1:1,747,633-1,747,944 | - | C1H1g03275 | C2H1g10438 | LOC_Os01g04670 | Os01g0139700 | - | Detail |
| CX1g005237 | 1:1,749,131-1,749,295 | - | - | - | - | - | - | Detail |
| CX1g006410 | 1:1,754,122-1,754,382 | - | C1H1g00558 | C2H1g06897 | LOC_Os01g04690 | Os01g0139900 | - | Detail |
| CX1g001618 | 1:1,766,387-1,767,883 | + | - | C2H1g19050 | LOC_Os01g04710 | Os01g0140100 | - | Detail |
| CX1g006468 | 1:1,775,034-1,780,326 | + | C1H1g31447 | C2H1g22483 | LOC_Os01g04720 | Os01g0140400 | - | Detail |
| CX1g000444 | 1:1,781,420-1,781,893 | + | C1H11g10773 | C2H1g01847 | LOC_Os01g04730 | Os01g0140500 | - | Detail |
| CX1g006554 | 1:1,798,418-1,799,371 | + | - | C2H1g19937 | LOC_Os01g04750 | Os01g0140700 | OsRAV8 | Detail |
| CX1g004648 | 1:1,822,752-1,823,855 | + | - | C2H1g00612 | LOC_Os01g04800 | Os01g0141000 | AP2/EREBP129, AP2/EREBP#129, OsRAV2, RAV2, OsRAV9, OsTEM1, OsRAV9/OsTEM1 | Detail |
| CX1g002238 | 1:1,836,514-1,843,175 | - | C1H1g09982 | C2H1g12872 | LOC_Os01g04814 | Os01g0141300 | - | Detail |
| CX1g004748 | 1:1,848,970-1,852,098 | - | C1H1g01035 | C2H1g10361 | LOC_Os01g04840 | Os01g0141300 | - | Detail |
| CX1g006709 | 1:1,857,476-1,862,006 | + | C1H1g10013 | C2H1g30366 | LOC_Os01g04860 | Os01g0141600 | - | Detail |
| CX1g005046 | 1:1,862,764-1,866,629 | - | C1H1g07767 | C2H1g30003 | LOC_Os01g04870 | Os01g0141700 | OsUV-DDB2 | Detail |