| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g23030 | 4:12,848,083-12,849,457 | - | C1H4g19496 | - | - | - | - | Detail |
| C2H4g00602 | 4:12,850,259-12,850,605 | - | C1H4g08388 | CX4g036087 | LOC_Os04g25740 | Os04g0314500 | - | Detail |
| C2H4g19204 | 4:12,858,513-12,859,484 | - | - | - | - | - | - | Detail |
| C2H4g15697 | 4:12,895,850-12,897,223 | + | C1H4g03848 | - | - | - | - | Detail |
| C2H4g29155 | 4:12,916,944-12,918,535 | + | C1H4g11483 | CX4g033259 | LOC_Os04g25140 | Os04g0316800 | - | Detail |
| C2H4g06744 | 4:12,919,272-12,920,661 | + | - | - | - | - | - | Detail |
| C2H4g17736 | 4:12,922,511-12,926,374 | + | - | CX4g036636 | LOC_Os08g23280 | - | - | Detail |
| C2H4g17585 | 4:12,938,735-12,939,963 | + | C1H4g23443 | CX4g034186 | LOC_Os04g25140 | Os04g0317300 | - | Detail |
| C2H4g06583 | 4:13,086,602-13,089,303 | + | C1H4g27437 | - | LOC_Os04g25360 | Os04g0319600 | - | Detail |
| C2H4g27440 | 4:13,091,166-13,092,677 | + | C1H4g01135 | CX4g032327 | LOC_Os04g25980 | Os04g0319700 | - | Detail |
| C2H4g14364 | 4:13,102,100-13,103,614 | + | C1H4g27404 | CX4g036582 | LOC_Os04g25380 | Os04g0319800 | - | Detail |
| C2H4g16249 | 4:13,104,369-13,113,257 | - | C1H4g11765 | CX4g034067 | LOC_Os04g25960 | Os04g0326000 | - | Detail |
| C2H4g13198 | 4:13,121,456-13,126,802 | + | C1H4g08601 | CX4g034663 | LOC_Os04g25400 | Os04g0320100 | OsHCAR | Detail |
| C2H4g23070 | 4:13,127,494-13,130,993 | - | C1H4g12613 | CX4g033316 | LOC_Os04g25410 | Os04g0320200 | - | Detail |
| C2H4g15158 | 4:13,156,262-13,157,832 | - | C1H4g07570 | CX4g036503 | LOC_Os04g25440 | Os04g0320700 | - | Detail |
| C2H4g21449 | 4:13,168,002-13,170,110 | + | C1H4g16139 | CX4g034511 | LOC_Os04g25490 | Os04g0320700 | - | Detail |
| C2H4g08941 | 4:13,181,718-13,182,491 | + | C1H4g05580 | CX4g034960 | LOC_Os04g25540 | Os04g0321500 | mtRPL27a, S28 | Detail |
| C2H4g14101 | 4:13,183,982-13,189,739 | + | C1H4g01277 | - | - | - | - | Detail |
| C2H4g20494 | 4:13,189,924-13,194,569 | - | C1H4g13430 | CX4g033520 | LOC_Os04g25560 | Os04g0321700 | - | Detail |
| C2H4g04631 | 4:13,197,873-13,198,361 | - | C1H4g19422 | CX4g035269 | LOC_Os04g25570 | Os04g0609600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g039529 | 5:7,631,236-7,632,117 | + | C1H5g21179 | C2H5g03508 | LOC_Os05g15880 | Os05g0247800 | OsXIP | Detail |
| CX5g040966 | 5:7,637,959-7,644,799 | - | C1H5g04227 | C2H5g09723 | LOC_Os05g15890 | Os05g0247900 | OsCHR713, CHR713 | Detail |
| CX5g038528 | 5:7,655,589-7,656,482 | + | C1H5g21179 | C2H5g03508 | LOC_Os05g15920 | Os05g0248200 | - | Detail |
| CX5g040278 | 5:7,656,900-7,657,077 | + | - | - | - | - | - | Detail |
| CX5g038055 | 5:7,663,141-7,665,000 | - | C1H5g29560 | C2H5g16380 | LOC_Os05g16000 | Os05g0249800 | - | Detail |
| CX5g038858 | 5:7,678,393-7,678,704 | - | C1H5g10784 | C2H5g23841 | LOC_Os05g16054 | Os05g0249100 | - | Detail |
| CX5g036929 | 5:7,689,346-7,689,852 | + | - | - | - | - | - | Detail |
| CX5g039741 | 5:7,690,376-7,690,663 | + | - | - | LOC_Os12g40930 | Os04g0367800 | - | Detail |
| CX5g039101 | 5:7,702,866-7,718,501 | - | C1H5g23916 | C2H5g02175 | LOC_Os05g16140 | Os05g0250000 | - | Detail |
| CX5g041055 | 5:7,730,869-7,733,775 | - | C1H5g19855 | C2H5g11862 | LOC_Os05g16200 | Os05g0250700 | - | Detail |
| CX5g039499 | 5:7,743,530-7,744,219 | - | C1H7g31370 | - | - | - | - | Detail |
| CX5g037269 | 5:7,756,773-7,756,991 | - | - | - | - | Os12g0254601 | - | Detail |
| CX5g041082 | 5:7,760,745-7,766,203 | - | C1H12g04637 | C2H5g08541 | LOC_Os05g16500 | - | - | Detail |
| CX5g038245 | 5:7,769,534-7,773,025 | - | C1H5g18798 | C2H5g10190 | LOC_Os05g16200 | Os05g0250700 | - | Detail |
| CX5g039794 | 5:7,799,276-7,800,313 | - | C1H5g13669 | C2H5g10863 | LOC_Os05g16230 | Os05g0251200 | - | Detail |
| CX5g039447 | 5:7,803,945-7,805,201 | - | C1H5g11478 | C2H5g12394 | LOC_Os05g16240 | Os05g0251200 | - | Detail |
| CX5g038303 | 5:7,806,994-7,813,661 | + | C1H5g13415 | C2H5g03213 | LOC_Os05g16250 | Os05g0251400 | OsBVF1, P31<sup>comet</sup> | Detail |
| CX5g037603 | 5:7,820,176-7,822,873 | + | C1H5g22880 | C2H5g11253 | - | - | - | Detail |
| CX5g040268 | 5:7,821,132-7,826,958 | - | C1H5g03577 | C2H5g17103 | LOC_Os05g16280 | Os05g0251900 | - | Detail |
| CX5g037131 | 5:7,828,762-7,829,244 | + | C1H5g15774 | C2H5g27742 | - | Os05g0590100 | - | Detail |