| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g03283 | 3:31,750,330-31,751,957 | - | C1H3g12556 | CX3g030607 | LOC_Os03g61270 | Os03g0828300 | - | Detail |
| C2H3g18546 | 3:31,757,601-31,759,139 | - | C1H3g04822 | CX3g029024 | LOC_Os03g61260 | Os03g0828100 | OsPRPL18 | Detail |
| C2H3g08381 | 3:31,762,816-31,765,445 | - | C1H3g26131 | CX3g026632 | LOC_Os03g61330 | Os03g0829000 | - | Detail |
| C2H3g25590 | 3:31,766,052-31,768,641 | - | C1H3g15915 | CX3g028011 | LOC_Os03g61340 | Os03g0829100 | - | Detail |
| C2H3g24696 | 3:31,769,426-31,772,607 | - | C1H3g03162 | CX3g026642 | LOC_Os03g61360 | Os03g0829200 | - | Detail |
| C2H3g26698 | 3:31,770,274-31,770,820 | + | C1H3g09916 | CX3g030512 | LOC_Os03g64340 | Os03g0829466 | - | Detail |
| C2H3g05880 | 3:31,778,758-31,779,428 | - | C1H3g23073 | CX3g025854 | LOC_Os03g61470 | Os03g0830400 | - | Detail |
| C2H3g17673 | 3:31,782,442-31,783,339 | - | C1H3g23073 | CX3g025854 | LOC_Os03g61440 | Os03g0829900 | OsFWL4 | Detail |
| C2H3g24444 | 3:31,786,174-31,791,693 | + | C1H10g15679 | - | - | - | - | Detail |
| C2H3g04636 | 3:31,793,778-31,794,478 | - | C1H3g07645 | CX3g025854 | LOC_Os03g61470 | Os03g0830200 | OsCNR10 | Detail |
| C2H3g11706 | 3:31,795,469-31,796,771 | + | C1H3g06410 | CX3g028250 | - | Os03g0206700 | - | Detail |
| C2H3g19882 | 3:31,800,078-31,803,074 | - | C1H3g25802 | CX3g026525 | LOC_Os03g61500 | Os03g0830400 | - | Detail |
| C2H3g03602 | 3:31,803,385-31,803,961 | - | C1H3g25802 | CX3g025854 | LOC_Os03g61470 | Os03g0830400 | - | Detail |
| C2H3g26647 | 3:31,805,366-31,805,719 | - | C1H3g23073 | CX3g025854 | LOC_Os03g61500 | Os03g0830400 | - | Detail |
| C2H3g22051 | 3:31,810,910-31,811,562 | - | C1H3g28428 | CX3g025854 | LOC_Os03g61500 | Os03g0830500 | OsFWL7 | Detail |
| C2H3g06697 | 3:31,818,779-31,823,973 | - | C1H3g03284 | CX3g029618 | LOC_Os03g61540 | Os03g0830900 | - | Detail |
| C2H3g08869 | 3:31,828,256-31,829,443 | + | C1H3g14942 | CX3g028759 | LOC_Os03g61550 | Os03g0831000 | - | Detail |
| C2H3g09913 | 3:31,829,771-31,835,212 | - | C1H3g25915 | CX3g026737 | LOC_Os03g61560 | Os03g0831100 | - | Detail |
| C2H3g11440 | 3:31,836,649-31,838,057 | + | C1H3g22820 | CX3g028619 | LOC_Os03g61570 | Os03g0831200 | GATA12 | Detail |
| C2H3g03666 | 3:31,841,906-31,845,417 | + | C1H3g04867 | CX3g030545 | LOC_Os03g61580 | Os03g0831300 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g039529 | 5:7,631,236-7,632,117 | + | C1H5g21179 | C2H5g03508 | LOC_Os05g15880 | Os05g0247800 | OsXIP | Detail |
| CX5g040966 | 5:7,637,959-7,644,799 | - | C1H5g04227 | C2H5g09723 | LOC_Os05g15890 | Os05g0247900 | OsCHR713, CHR713 | Detail |
| CX5g038528 | 5:7,655,589-7,656,482 | + | C1H5g21179 | C2H5g03508 | LOC_Os05g15920 | Os05g0248200 | - | Detail |
| CX5g040278 | 5:7,656,900-7,657,077 | + | - | - | - | - | - | Detail |
| CX5g038055 | 5:7,663,141-7,665,000 | - | C1H5g29560 | C2H5g16380 | LOC_Os05g16000 | Os05g0249800 | - | Detail |
| CX5g038858 | 5:7,678,393-7,678,704 | - | C1H5g10784 | C2H5g23841 | LOC_Os05g16054 | Os05g0249100 | - | Detail |
| CX5g036929 | 5:7,689,346-7,689,852 | + | - | - | - | - | - | Detail |
| CX5g039741 | 5:7,690,376-7,690,663 | + | - | - | LOC_Os12g40930 | Os04g0367800 | - | Detail |
| CX5g039101 | 5:7,702,866-7,718,501 | - | C1H5g23916 | C2H5g02175 | LOC_Os05g16140 | Os05g0250000 | - | Detail |
| CX5g041055 | 5:7,730,869-7,733,775 | - | C1H5g19855 | C2H5g11862 | LOC_Os05g16200 | Os05g0250700 | - | Detail |
| CX5g039499 | 5:7,743,530-7,744,219 | - | C1H7g31370 | - | - | - | - | Detail |
| CX5g037269 | 5:7,756,773-7,756,991 | - | - | - | - | Os12g0254601 | - | Detail |
| CX5g041082 | 5:7,760,745-7,766,203 | - | C1H12g04637 | C2H5g08541 | LOC_Os05g16500 | - | - | Detail |
| CX5g038245 | 5:7,769,534-7,773,025 | - | C1H5g18798 | C2H5g10190 | LOC_Os05g16200 | Os05g0250700 | - | Detail |
| CX5g039794 | 5:7,799,276-7,800,313 | - | C1H5g13669 | C2H5g10863 | LOC_Os05g16230 | Os05g0251200 | - | Detail |
| CX5g039447 | 5:7,803,945-7,805,201 | - | C1H5g11478 | C2H5g12394 | LOC_Os05g16240 | Os05g0251200 | - | Detail |
| CX5g038303 | 5:7,806,994-7,813,661 | + | C1H5g13415 | C2H5g03213 | LOC_Os05g16250 | Os05g0251400 | OsBVF1, P31<sup>comet</sup> | Detail |
| CX5g037603 | 5:7,820,176-7,822,873 | + | C1H5g22880 | C2H5g11253 | - | - | - | Detail |
| CX5g040268 | 5:7,821,132-7,826,958 | - | C1H5g03577 | C2H5g17103 | LOC_Os05g16280 | Os05g0251900 | - | Detail |
| CX5g037131 | 5:7,828,762-7,829,244 | + | C1H5g15774 | C2H5g27742 | - | Os05g0590100 | - | Detail |