| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g23101 | 3:19,410,688-19,415,180 | - | C2H3g29578 | CX3g027874 | LOC_Os03g36930 | Os03g0566800 | OsRH34 | Detail |
| C1H3g16061 | 3:19,430,006-19,433,988 | - | C2H3g07333 | CX3g026662 | LOC_Os03g37010 | Os03g0567600 | - | Detail |
| C1H3g23205 | 3:19,448,868-19,451,893 | + | C2H3g10852 | CX3g029436 | LOC_Os03g37070 | Os03g0850200 | - | Detail |
| C1H3g08263 | 3:19,456,477-19,458,439 | + | C2H3g20404 | CX3g025716 | LOC_Os03g37080 | Os03g0568400 | - | Detail |
| C1H3g01309 | 3:19,459,058-19,461,767 | - | C2H3g17716 | CX3g029847 | LOC_Os03g37090 | Os03g0568500 | - | Detail |
| C1H3g18739 | 3:19,465,351-19,466,841 | + | C2H3g18006 | CX3g026252 | LOC_Os03g37100 | Os03g0568600 | - | Detail |
| C1H3g05688 | 3:19,471,860-19,474,494 | + | C2H3g16322 | CX3g027192 | LOC_Os03g37120 | Os03g0568800 | - | Detail |
| C1H3g03504 | 3:19,474,841-19,479,999 | - | C2H3g06254 | CX3g029489 | LOC_Os03g37130 | Os03g0568900 | - | Detail |
| C1H3g26605 | 3:19,493,258-19,497,592 | - | C2H3g17441 | CX3g025311 | LOC_Os03g37140 | Os03g0569000 | - | Detail |
| C1H3g17254 | 3:19,513,347-19,513,616 | - | C2H3g20952 | - | - | - | - | Detail |
| C1H3g00059 | 3:19,513,904-19,514,287 | - | C2H3g20952 | CX3g030124 | LOC_Os03g37250 | Os03g0371800 | - | Detail |
| C1H3g31240 | 3:19,519,946-19,531,990 | - | C2H3g04834 | CX3g028524 | LOC_Os03g37270 | Os03g0569900 | - | Detail |
| C1H3g30706 | 3:19,537,150-19,541,936 | - | C2H3g07443 | CX3g031074 | LOC_Os03g37290 | Os03g0570100 | - | Detail |
| C1H3g18124 | 3:19,551,178-19,556,527 | - | C2H3g06300 | CX3g029054 | LOC_Os03g37320 | Os03g0570200 | - | Detail |
| C1H3g17549 | 3:19,623,028-19,628,118 | - | C2H3g03314 | CX3g025116 | LOC_Os03g37411 | Os03g0570800 | - | Detail |
| C1H3g27432 | 3:19,643,555-19,654,033 | - | C2H3g02646 | CX3g029952 | LOC_Os03g37470 | Os03g0571700 | - | Detail |
| C1H3g08970 | 3:19,679,023-19,685,561 | - | C2H3g08828 | CX3g030772 | LOC_Os03g37490 | Os03g0571900 | PEZ1 | Detail |
| C1H3g05664 | 3:19,686,886-19,687,370 | - | C2H3g29483 | CX3g028394 | - | - | - | Detail |
| C1H3g17823 | 3:19,714,938-19,721,766 | + | C2H3g08636 | - | - | - | - | Detail |
| C1H3g04391 | 3:19,734,970-19,736,597 | - | C2H3g22194 | CX3g029443 | LOC_Os03g37570 | Os03g0572250 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g039529 | 5:7,631,236-7,632,117 | + | C1H5g21179 | C2H5g03508 | LOC_Os05g15880 | Os05g0247800 | OsXIP | Detail |
| CX5g040966 | 5:7,637,959-7,644,799 | - | C1H5g04227 | C2H5g09723 | LOC_Os05g15890 | Os05g0247900 | OsCHR713, CHR713 | Detail |
| CX5g038528 | 5:7,655,589-7,656,482 | + | C1H5g21179 | C2H5g03508 | LOC_Os05g15920 | Os05g0248200 | - | Detail |
| CX5g040278 | 5:7,656,900-7,657,077 | + | - | - | - | - | - | Detail |
| CX5g038055 | 5:7,663,141-7,665,000 | - | C1H5g29560 | C2H5g16380 | LOC_Os05g16000 | Os05g0249800 | - | Detail |
| CX5g038858 | 5:7,678,393-7,678,704 | - | C1H5g10784 | C2H5g23841 | LOC_Os05g16054 | Os05g0249100 | - | Detail |
| CX5g036929 | 5:7,689,346-7,689,852 | + | - | - | - | - | - | Detail |
| CX5g039741 | 5:7,690,376-7,690,663 | + | - | - | LOC_Os12g40930 | Os04g0367800 | - | Detail |
| CX5g039101 | 5:7,702,866-7,718,501 | - | C1H5g23916 | C2H5g02175 | LOC_Os05g16140 | Os05g0250000 | - | Detail |
| CX5g041055 | 5:7,730,869-7,733,775 | - | C1H5g19855 | C2H5g11862 | LOC_Os05g16200 | Os05g0250700 | - | Detail |
| CX5g039499 | 5:7,743,530-7,744,219 | - | C1H7g31370 | - | - | - | - | Detail |
| CX5g037269 | 5:7,756,773-7,756,991 | - | - | - | - | Os12g0254601 | - | Detail |
| CX5g041082 | 5:7,760,745-7,766,203 | - | C1H12g04637 | C2H5g08541 | LOC_Os05g16500 | - | - | Detail |
| CX5g038245 | 5:7,769,534-7,773,025 | - | C1H5g18798 | C2H5g10190 | LOC_Os05g16200 | Os05g0250700 | - | Detail |
| CX5g039794 | 5:7,799,276-7,800,313 | - | C1H5g13669 | C2H5g10863 | LOC_Os05g16230 | Os05g0251200 | - | Detail |
| CX5g039447 | 5:7,803,945-7,805,201 | - | C1H5g11478 | C2H5g12394 | LOC_Os05g16240 | Os05g0251200 | - | Detail |
| CX5g038303 | 5:7,806,994-7,813,661 | + | C1H5g13415 | C2H5g03213 | LOC_Os05g16250 | Os05g0251400 | OsBVF1, P31<sup>comet</sup> | Detail |
| CX5g037603 | 5:7,820,176-7,822,873 | + | C1H5g22880 | C2H5g11253 | - | - | - | Detail |
| CX5g040268 | 5:7,821,132-7,826,958 | - | C1H5g03577 | C2H5g17103 | LOC_Os05g16280 | Os05g0251900 | - | Detail |
| CX5g037131 | 5:7,828,762-7,829,244 | + | C1H5g15774 | C2H5g27742 | - | Os05g0590100 | - | Detail |