| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H9g22972 | 9:319,742-324,687 | + | C1H9g01741 | CX9g057297 | LOC_Os09g01600 | Os09g0103200 | - | Detail |
| C2H9g16676 | 9:328,751-329,740 | - | - | CX9g056224 | LOC_Os09g01610 | Os09g0103400 | - | Detail |
| C2H9g07969 | 9:332,866-338,494 | + | C1H9g12264 | CX9g055170 | LOC_Os09g01620 | Os09g0103500 | - | Detail |
| C2H9g23774 | 9:340,939-347,729 | - | C1H9g24389 | CX9g055607 | LOC_Os09g01630 | Os09g0103600 | - | Detail |
| C2H9g29883 | 9:352,438-353,571 | + | - | CX9g057259 | LOC_Os09g01640 | Os09g0103700 | - | Detail |
| C2H9g16389 | 9:376,815-377,173 | - | C1H9g20260 | CX9g057224 | - | - | - | Detail |
| C2H9g22729 | 9:378,725-385,026 | + | C1H9g06955 | CX9g055907 | LOC_Os09g01650 | Os09g0103800 | - | Detail |
| C2H9g16634 | 9:406,184-412,350 | - | C1H9g22354 | CX9g057376 | LOC_Os09g01680 | Os09g0104200 | RAD51D, OsRAD51D.3, OsRAD51D, OsRad51D | Detail |
| C2H9g14701 | 9:412,420-415,177 | + | C1H9g21586 | - | LOC_Os09g01690 | Os09g0104300 | - | Detail |
| C2H9g10538 | 9:416,660-419,290 | - | - | CX9g056747 | LOC_Os09g01700 | Os09g0104700 | - | Detail |
| C2H9g17453 | 9:446,949-450,853 | - | C1H9g13033 | CX9g054917 | LOC_Os09g01790 | - | - | Detail |
| C2H9g11873 | 9:488,506-491,881 | + | C1H9g15386 | CX9g056345 | - | - | - | Detail |
| C2H9g07049 | 9:540,701-541,678 | - | - | CX9g057727 | LOC_Os09g01960 | Os09g0106700 | - | Detail |
| C2H9g27759 | 9:579,666-579,827 | - | - | CX9g056249 | LOC_Os09g02000 | Os09g0107400 | - | Detail |
| C2H9g16224 | 9:604,424-611,143 | + | C1H9g28229 | CX9g056897 | LOC_Os09g02130 | Os09g0108400 | - | Detail |
| C2H9g00527 | 9:621,532-627,797 | + | C1H9g14656 | CX9g058002 | LOC_Os09g02140 | Os09g0108600 | - | Detail |
| C2H9g13991 | 9:630,539-631,420 | - | - | - | - | - | - | Detail |
| C2H9g03100 | 9:654,975-655,436 | + | - | CX9g056432 | LOC_Os09g02150 | - | - | Detail |
| C2H9g06082 | 9:665,702-671,407 | - | C1H9g00172 | CX9g056152 | LOC_Os09g02170 | Os09g0109500 | - | Detail |
| C2H9g24122 | 9:673,188-673,482 | + | C1H9g18224 | - | LOC_Os09g02180 | Os09g0109600 | OsDSSR1 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g038951 | 5:6,441,377-6,442,561 | + | C1H5g23487 | C2H5g00369 | LOC_Os05g13360 | Os05g0220500 | - | Detail |
| CX5g037916 | 5:6,443,664-6,446,838 | - | C1H5g02752 | C2H5g29656 | LOC_Os05g13370 | Os05g0220600 | - | Detail |
| CX5g039547 | 5:6,453,339-6,458,508 | + | C1H5g29818 | C2H5g26571 | LOC_Os05g13390 | Os05g0220900 | - | Detail |
| CX5g040665 | 5:6,460,938-6,466,933 | - | C1H5g02950 | C2H5g20175 | LOC_Os05g13440 | Os05g0221400 | - | Detail |
| CX5g040260 | 5:6,470,938-6,472,047 | - | C1H5g09162 | C2H5g05529 | LOC_Os05g13490 | Os05g0215066 | - | Detail |
| CX5g039428 | 5:6,484,239-6,489,141 | - | C1H5g15223 | C2H5g02828 | LOC_Os05g13520 | Os05g0222200 | - | Detail |
| CX5g037683 | 5:6,518,083-6,518,827 | - | - | - | - | - | - | Detail |
| CX5g039917 | 5:6,563,406-6,564,155 | - | - | - | - | - | - | Detail |
| CX5g037657 | 5:6,588,305-6,591,482 | + | C1H5g15470 | C2H5g23356 | LOC_Os05g13770 | Os05g0157100 | - | Detail |
| CX5g037944 | 5:6,592,458-6,606,269 | - | C1H5g10074 | C2H5g22663 | LOC_Os05g13780 | Os05g0224800 | - | Detail |
| CX5g037213 | 5:6,624,035-6,624,322 | + | - | - | - | - | - | Detail |
| CX5g038690 | 5:6,629,155-6,629,527 | + | - | - | LOC_Os05g13810 | Os05g0225500 | - | Detail |
| CX5g039236 | 5:6,654,348-6,654,737 | - | - | - | - | - | - | Detail |
| CX5g041081 | 5:6,663,470-6,663,761 | - | - | - | - | - | - | Detail |
| CX5g041145 | 5:6,664,395-6,665,156 | - | C1H5g17043 | C2H5g25848 | LOC_Os05g13940 | Os05g0227600 | OsRePRP1.2 | Detail |
| CX5g040020 | 5:6,671,315-6,672,106 | - | C1H5g17043 | C2H5g25848 | LOC_Os05g13850 | Os05g0226000 | - | Detail |
| CX5g038428 | 5:6,677,992-6,678,795 | - | C1H5g17043 | C2H5g25848 | LOC_Os05g13850 | Os05g0226000 | - | Detail |
| CX5g039206 | 5:6,686,230-6,686,484 | - | C1H12g24303 | - | LOC_Os10g02314 | Os05g0590550 | - | Detail |
| CX5g039944 | 5:6,688,220-6,688,759 | + | C1H5g17180 | C2H5g27666 | LOC_Os05g13860 | Os05g0226300 | - | Detail |
| CX5g039542 | 5:6,695,191-6,695,824 | - | - | - | - | - | - | Detail |