| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g23154 | 4:25,375,879-25,376,383 | + | C2H4g16720 | CX4g035222 | LOC_Os04g48870 | Os04g0578300 | - | Detail |
| C1H4g05799 | 4:25,380,434-25,382,490 | + | C2H4g19270 | CX4g033101 | LOC_Os04g48880 | Os04g0578400 | - | Detail |
| C1H4g10126 | 4:25,385,788-25,387,233 | + | C2H4g07940 | CX4g036080 | - | Os04g0578550 | - | Detail |
| C1H4g19909 | 4:25,389,934-25,392,744 | - | C2H4g30133 | CX4g031675 | LOC_Os04g48930 | Os04g0578600 | OsFRO2, OsFRO1 | Detail |
| C1H4g18610 | 4:25,395,649-25,402,145 | + | C2H4g19460 | CX4g031656 | LOC_Os04g48940 | Os04g0578700 | - | Detail |
| C1H4g06167 | 4:25,403,323-25,405,698 | - | C2H4g08137 | CX4g031706 | LOC_Os04g48950 | Os04g0578800 | - | Detail |
| C1H4g02070 | 4:25,453,772-25,456,031 | + | C2H4g23542 | CX4g031363 | LOC_Os04g49060 | Os04g0579700 | - | Detail |
| C1H4g09996 | 4:25,478,430-25,481,611 | - | C2H4g28226 | - | LOC_Os04g49130 | Os04g0580400 | OsSCE3 | Detail |
| C1H4g17233 | 4:25,493,735-25,494,082 | + | - | - | - | - | - | Detail |
| C1H4g28417 | 4:25,494,507-25,500,090 | + | C2H4g28180 | CX4g036099 | LOC_Os04g49150 | Os04g0580700 | MADS17, OsMADS17, NMADS3, RMADS213, nmads3 | Detail |
| C1H4g25535 | 4:25,522,941-25,524,543 | - | - | CX12g016081 | LOC_Os12g18450 | - | - | Detail |
| C1H4g30271 | 4:25,528,884-25,529,605 | + | C2H4g16797 | CX4g035989 | LOC_Os04g49194 | Os04g0581000 | OsSAH2 | Detail |
| C1H4g21644 | 4:25,533,632-25,535,003 | + | C2H4g02021 | CX4g035989 | LOC_Os04g49194 | Os04g0581000 | OsSAH2 | Detail |
| C1H4g27247 | 4:25,536,556-25,537,960 | - | C2H4g17595 | CX4g034941 | LOC_Os04g49210 | Os04g0581100 | OsSAH3 | Detail |
| C1H4g19809 | 4:25,548,364-25,551,428 | - | C2H4g22618 | CX4g034701 | LOC_Os04g49220 | Os04g0581300 | - | Detail |
| C1H4g26375 | 4:25,602,473-25,602,983 | - | C2H4g27357 | CX4g036477 | LOC_Os04g49260 | Os04g0581800 | - | Detail |
| C1H4g04071 | 4:25,605,130-25,609,018 | - | C2H4g21103 | CX4g033493 | LOC_Os04g49270 | Os04g0582000 | OsDNA2_12 | Detail |
| C1H4g14184 | 4:25,610,403-25,615,940 | - | C2H4g08363 | CX4g033493 | LOC_Os04g49310 | Os04g0582600 | OsDNA2_13 | Detail |
| C1H4g22667 | 4:25,617,263-25,622,773 | - | C2H4g18439 | CX4g036138 | LOC_Os04g49320 | Os04g0582700 | OsDNA2_10 | Detail |
| C1H4g13543 | 4:25,624,250-25,626,330 | - | C2H4g27939 | CX4g036138 | LOC_Os04g49340 | Os04g0582900 | OsDNA2_11 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g041109 | 5:5,584,318-5,587,637 | + | C1H5g21872 | C2H5g24011 | LOC_Os05g11910 | Os05g0209600 | OsGELP63 | Detail |
| CX5g038898 | 5:5,588,956-5,589,147 | - | - | - | LOC_Os05g11920 | - | - | Detail |
| CX5g040492 | 5:5,589,691-5,590,469 | + | C1H5g04532 | C2H5g19454 | LOC_Os05g11930 | - | - | Detail |
| CX5g039221 | 5:5,614,718-5,614,909 | - | - | - | - | Os05g0209950 | - | Detail |
| CX5g037964 | 5:5,619,171-5,619,338 | + | - | - | - | - | - | Detail |
| CX5g039081 | 5:5,623,228-5,625,149 | + | C1H5g29109 | C2H5g23138 | LOC_Os05g11950 | Os05g0210100 | MHZ11 | Detail |
| CX5g037430 | 5:5,630,929-5,634,741 | + | C1H5g13016 | C2H5g20303 | LOC_Os05g11970 | Os05g0210400 | - | Detail |
| CX5g037283 | 5:5,635,603-5,645,336 | - | C1H5g08574 | C2H5g23217 | LOC_Os05g11980 | Os05g0210500 | - | Detail |
| CX5g037900 | 5:5,646,116-5,646,340 | - | - | - | - | Os05g0210525 | - | Detail |
| CX5g037259 | 5:5,650,726-5,654,294 | + | C1H5g03321 | C2H5g17500 | LOC_Os05g11990 | Os05g0210600 | - | Detail |
| CX5g037736 | 5:5,656,208-5,656,672 | - | C1H5g16697 | C2H5g13586 | LOC_Os05g12000 | Os05g0210700 | - | Detail |
| CX5g040841 | 5:5,681,140-5,684,960 | - | C1H5g18726 | C2H5g28388 | LOC_Os05g12040 | Os05g0211100 | CYP51G3, OsCYP51G3 | Detail |
| CX5g041104 | 5:5,715,053-5,715,337 | + | C1H5g12172 | C2H5g29672 | - | - | - | Detail |
| CX5g038783 | 5:5,731,433-5,733,901 | + | C1H5g19296 | C2H5g23232 | LOC_Os05g12130 | Os05g0212100 | - | Detail |
| CX5g040101 | 5:5,734,768-5,737,208 | - | C1H5g21608 | C2H5g07820 | LOC_Os05g12140 | Os05g0212200 | - | Detail |
| CX5g037510 | 5:5,740,994-5,741,320 | + | - | - | - | Os05g0504800 | - | Detail |
| CX5g039223 | 5:5,764,853-5,767,382 | - | C1H5g08793 | C2H5g25273 | LOC_Os05g12150 | Os05g0212300 | - | Detail |
| CX5g038195 | 5:5,779,871-5,785,802 | - | C1H5g26139 | C2H5g13514 | LOC_Os05g12170 | Os05g0212400 | - | Detail |
| CX5g037296 | 5:5,790,811-5,793,275 | - | C1H5g26297 | C2H5g15911 | LOC_Os05g12180 | Os05g0212900 | - | Detail |
| CX5g039948 | 5:5,797,178-5,797,468 | + | - | - | - | - | - | Detail |