| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g15008 | 3:25,380,391-25,382,918 | - | C2H3g05036 | CX3g027869 | LOC_Os03g47730 | Os03g0680700 | - | Detail |
| C1H3g11695 | 3:25,386,485-25,387,041 | - | - | - | LOC_Os03g47740 | - | - | Detail |
| C1H3g03715 | 3:25,387,095-25,393,085 | - | C2H3g11834 | CX3g029265 | LOC_Os03g47740 | Os03g0680800 | - | Detail |
| C1H3g12498 | 3:25,415,597-25,437,897 | + | C2H3g10722 | CX3g028531 | LOC_Os03g47760 | Os03g0681300 | - | Detail |
| C1H3g24402 | 3:25,438,866-25,443,544 | - | C2H3g08660 | CX3g025611 | LOC_Os03g47770 | Os03g0681400 | - | Detail |
| C1H3g21990 | 3:25,446,337-25,450,295 | + | C2H3g06154 | CX3g025413 | LOC_Os03g47780 | Os03g0681700 | OsWD40-81, OsLST8, LST8 | Detail |
| C1H3g03027 | 3:25,451,805-25,457,119 | - | C2H3g08631 | CX3g030716 | LOC_Os03g47790 | Os03g0681800 | - | Detail |
| C1H3g11959 | 3:25,468,236-25,472,054 | - | C2H3g29470 | CX3g030858 | LOC_Os03g47800 | Os03g0681900 | - | Detail |
| C1H3g05321 | 3:25,472,617-25,475,994 | - | C2H3g25886 | CX3g025153 | - | - | - | Detail |
| C1H3g19741 | 3:25,488,746-25,496,735 | - | C2H3g14407 | CX3g029458 | LOC_Os03g47820 | Os03g0682200 | - | Detail |
| C1H3g01296 | 3:25,514,058-25,515,446 | + | C2H3g07169 | CX3g029210 | LOC_Os03g47860 | Os03g0682900 | OsACT | Detail |
| C1H3g26805 | 3:25,522,398-25,523,171 | - | C2H3g28221 | CX3g030162 | LOC_Os03g47890 | Os03g0683200 | - | Detail |
| C1H3g30362 | 3:25,527,135-25,528,459 | - | C2H3g09855 | CX3g027958 | LOC_Os03g47896 | Os03g0683300 | - | Detail |
| C1H3g01955 | 3:25,534,161-25,551,193 | - | C2H3g01457 | - | - | Os03g0683816 | - | Detail |
| C1H3g30757 | 3:25,534,374-25,546,485 | + | C2H3g15375 | CX3g026415 | LOC_Os03g47930 | Os03g0138600 | - | Detail |
| C1H3g31733 | 3:25,547,703-25,552,026 | + | C2H3g26490 | CX3g030593 | LOC_Os03g47940 | Os03g0683800 | - | Detail |
| C1H3g20424 | 3:25,553,856-25,571,344 | - | C2H3g09499 | CX3g028427 | LOC_Os03g47949 | Os03g0683900 | - | Detail |
| C1H3g09827 | 3:25,573,493-25,579,102 | - | C2H3g10030 | CX3g029806 | LOC_Os03g47980 | Os03g0684100 | - | Detail |
| C1H3g13222 | 3:25,580,028-25,582,775 | + | C2H3g27014 | CX3g027899 | LOC_Os03g47990 | Os03g0684300 | - | Detail |
| C1H3g18256 | 3:25,584,274-25,590,281 | + | C2H3g26230 | CX3g029805 | LOC_Os03g48000 | Os03g0684400 | OsMGT3 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g037069 | 5:5,430,476-5,431,795 | - | C1H5g27296 | C2H5g28431 | LOC_Os05g11650 | - | - | Detail |
| CX5g037110 | 5:5,433,887-5,434,060 | + | - | - | - | - | - | Detail |
| CX5g040063 | 5:5,436,933-5,437,100 | + | - | - | - | - | - | Detail |
| CX5g036961 | 5:5,461,456-5,462,643 | + | C1H5g00832 | C2H5g00026 | LOC_Os05g11700 | Os05g0207200 | PPR5 | Detail |
| CX5g040293 | 5:5,463,917-5,465,679 | + | C1H6g25462 | C2H5g21868 | LOC_Os05g11710 | Os05g0207300 | - | Detail |
| CX5g040567 | 5:5,466,270-5,468,932 | - | C1H5g17582 | C2H5g29298 | LOC_Os05g11720 | Os05g0207400 | - | Detail |
| CX5g039027 | 5:5,470,534-5,470,683 | + | - | - | - | - | - | Detail |
| CX5g040833 | 5:5,471,839-5,477,884 | - | C1H5g05386 | C2H5g03783 | LOC_Os05g11730 | Os05g0207500 | GSK2, Os GSK2, OsGSK2, Os BIN2, OsBIN2 | Detail |
| CX5g039805 | 5:5,480,900-5,484,907 | - | C1H5g05946 | C2H5g17868 | LOC_Os05g11750 | Os05g0207700 | - | Detail |
| CX5g040662 | 5:5,496,206-5,509,010 | + | C1H5g22540 | C2H5g16919 | LOC_Os05g11770 | Os05g0207900 | - | Detail |
| CX5g037855 | 5:5,515,570-5,518,967 | + | C1H5g04526 | C2H5g18196 | LOC_Os05g11780 | Os05g0208000 | - | Detail |
| CX5g037275 | 5:5,520,199-5,521,617 | - | C1H5g29251 | C2H5g05539 | LOC_Os05g11790 | Os05g0208100 | - | Detail |
| CX5g039127 | 5:5,531,942-5,536,311 | - | C1H5g27460 | C2H5g00233 | LOC_Os05g11810 | Os05g0208550 | - | Detail |
| CX5g038870 | 5:5,549,745-5,555,843 | - | C1H5g07351 | C2H5g13507 | LOC_Os05g11850 | Os05g0209100 | - | Detail |
| CX5g040643 | 5:5,557,944-5,558,348 | + | - | - | - | - | - | Detail |
| CX5g040857 | 5:5,559,659-5,559,982 | + | - | - | - | - | - | Detail |
| CX5g039304 | 5:5,562,100-5,562,882 | - | C1H5g28482 | C2H5g10119 | LOC_Os05g11860 | Os05g0426066 | - | Detail |
| CX5g038086 | 5:5,565,335-5,565,484 | + | - | - | - | - | - | Detail |
| CX5g040486 | 5:5,567,962-5,568,735 | + | C1H5g03790 | C2H5g11847 | LOC_Os05g11870 | Os05g0209400 | - | Detail |
| CX5g039069 | 5:5,572,677-5,573,050 | + | C1H5g13449 | C2H5g12685 | LOC_Os05g11900 | Os05g0209500 | - | Detail |