| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g00412 | 1:1,205,291-1,207,738 | + | C2H1g24576 | CX1g003465 | LOC_Os01g03660 | Os01g0127400 | - | Detail |
| C1H1g25838 | 1:1,209,203-1,209,889 | + | C2H1g17865 | CX1g002042 | LOC_Os01g03720 | Os01g0127450 | - | Detail |
| C1H1g17663 | 1:1,210,419-1,211,515 | + | C2H1g02319 | CX1g005179 | LOC_Os01g03670 | Os01g0127500 | OsTKPR2 | Detail |
| C1H1g24827 | 1:1,215,246-1,217,557 | + | C2H1g03781 | CX1g006285 | LOC_Os01g02760 | Os01g0127700 | - | Detail |
| C1H1g05668 | 1:1,217,661-1,218,315 | + | C2H1g03781 | CX1g006285 | LOC_Os01g03690 | Os01g0117400 | - | Detail |
| C1H1g08835 | 1:1,225,922-1,230,986 | + | C2H1g13836 | CX1g004218 | LOC_Os01g03710 | Os01g0127900 | - | Detail |
| C1H1g25654 | 1:1,241,292-1,242,522 | - | C2H1g25959 | CX1g002896 | LOC_Os01g03720 | Os01g0128000 | MYB1, Os2R_MYB1 | Detail |
| C1H1g31764 | 1:1,254,615-1,256,427 | - | C2H1g01385 | CX1g004405 | LOC_Os01g03740 | Os01g0128100 | - | Detail |
| C1H1g04042 | 1:1,257,095-1,260,002 | + | C2H1g18960 | CX1g004550 | LOC_Os01g03730 | Os01g0128200 | - | Detail |
| C1H1g30874 | 1:1,260,240-1,261,552 | - | C2H1g15883 | CX1g002239 | LOC_Os01g03750 | Os01g0128300 | MHZ4 | Detail |
| C1H1g07436 | 1:1,262,139-1,267,477 | - | C2H1g19347 | CX1g006333 | LOC_Os01g03760 | Os01g0128400 | - | Detail |
| C1H1g20521 | 1:1,272,265-1,280,309 | + | C2H1g18545 | CX1g003056 | LOC_Os01g03820 | Os01g0128800 | - | Detail |
| C1H1g27481 | 1:1,292,873-1,294,279 | + | C2H1g10390 | CX1g002103 | LOC_Os01g03840 | Os01g0129200 | SL1, sl1(t), sl1, stl1, opb, OPB1, ps, PS, OPB | Detail |
| C1H1g30507 | 1:1,306,551-1,309,571 | - | C2H1g17049 | CX1g003490 | LOC_Os01g03870 | Os01g0129500 | - | Detail |
| C1H1g11492 | 1:1,322,229-1,323,238 | + | C2H1g13371 | CX1g006241 | LOC_Os01g03890 | Os01g0129600 | - | Detail |
| C1H1g30416 | 1:1,349,867-1,352,853 | - | C2H1g29639 | CX1g005809 | LOC_Os01g03914 | Os01g0130000 | - | Detail |
| C1H1g04895 | 1:1,357,467-1,357,897 | - | C2H1g15465 | - | LOC_Os01g03914 | - | - | Detail |
| C1H1g15284 | 1:1,383,194-1,387,792 | + | C2H1g02978 | CX1g003798 | LOC_Os01g03950 | Os01g0130400 | - | Detail |
| C1H1g17044 | 1:1,417,733-1,418,275 | + | C2H1g14763 | - | - | - | - | Detail |
| C1H1g07180 | 1:1,419,589-1,420,156 | + | C2H1g14763 | - | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g038579 | 5:3,820,484-3,821,159 | - | C1H5g24081 | C2H5g23593 | LOC_Os05g08550 | - | - | Detail |
| CX5g037926 | 5:3,822,020-3,822,196 | - | - | C2H5g22086 | LOC_Os05g08554 | - | - | Detail |
| CX5g037936 | 5:3,826,130-3,828,802 | - | C1H5g28500 | C2H5g19576 | LOC_Os05g08560 | Os05g0178400 | - | Detail |
| CX5g037730 | 5:3,835,527-3,835,721 | + | - | - | - | - | - | Detail |
| CX5g039091 | 5:3,838,301-3,838,749 | - | C1H5g30909 | C2H5g23931 | LOC_Os05g08570 | Os05g0178600 | - | Detail |
| CX5g038646 | 5:3,838,784-3,839,041 | - | C1H5g11220 | C2H5g20930 | - | Os05g0178600 | - | Detail |
| CX5g038400 | 5:3,859,995-3,862,538 | + | C1H5g28275 | C2H5g20358 | LOC_Os05g08600 | Os05g0178900 | - | Detail |
| CX5g039771 | 5:3,867,412-3,869,324 | + | C1H5g03795 | C2H5g18108 | LOC_Os05g08610 | Os05g0179000 | - | Detail |
| CX5g036716 | 5:3,880,780-3,881,376 | - | - | - | - | - | - | Detail |
| CX5g037983 | 5:3,903,415-3,904,836 | - | C1H5g19959 | C2H5g17102 | LOC_Os05g08640 | Os05g0179300 | - | Detail |
| CX5g039721 | 5:3,931,263-3,933,940 | + | C1H5g21520 | C2H5g23753 | LOC_Os05g08730 | Os05g0179800 | - | Detail |
| CX5g039999 | 5:3,935,370-3,936,286 | - | C1H5g28593 | C2H5g27114 | LOC_Os05g08740 | Os05g0179900 | - | Detail |
| CX5g037027 | 5:3,944,256-3,945,836 | + | - | - | - | - | - | Detail |
| CX5g040085 | 5:3,956,200-3,957,393 | - | C1H5g31408 | C2H5g17918 | LOC_Os05g08770 | Os05g0180300 | - | Detail |
| CX5g038350 | 5:3,973,780-3,977,278 | - | C1H5g27830 | C2H5g25802 | LOC_Os05g08790 | Os05g0180400 | - | Detail |
| CX5g037875 | 5:3,979,718-3,981,126 | - | C1H5g02747 | C2H5g06685 | LOC_Os05g08800 | Os05g0180500 | - | Detail |
| CX5g036876 | 5:3,996,299-4,005,615 | - | C1H5g20076 | C2H5g05984 | LOC_Os05g08810 | Os05g0180600 | - | Detail |
| CX5g037205 | 5:4,007,402-4,008,502 | + | C1H5g03323 | C2H5g03050 | LOC_Os05g08820 | Os05g0180700 | - | Detail |
| CX5g037851 | 5:4,017,037-4,022,418 | + | C1H5g21276 | C2H5g11956 | LOC_Os05g08840 | Os05g0181000 | - | Detail |
| CX5g040764 | 5:4,024,541-4,026,109 | + | C1H5g15251 | C2H5g19880 | LOC_Os05g08850 | Os05g0181200 | - | Detail |