| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g24320 | 1:27,562,832-27,568,060 | - | C2H1g29572 | CX1g000235 | LOC_Os01g53680 | Os01g0738800 | - | Detail |
| C1H1g12855 | 1:27,570,268-27,575,965 | - | C2H1g23624 | CX1g004470 | LOC_Os01g53700 | Os01g0739000 | - | Detail |
| C1H1g24492 | 1:27,582,823-27,590,553 | + | C2H1g10920 | CX1g005768 | LOC_Os01g53710 | Os01g0739200 | - | Detail |
| C1H1g03337 | 1:27,592,155-27,598,910 | + | C2H1g15871 | CX1g005163 | LOC_Os01g53720 | Os01g0739400 | - | Detail |
| C1H1g05863 | 1:27,599,118-27,599,744 | - | C2H1g19412 | CX1g004558 | LOC_Os01g53730 | Os01g0739500 | - | Detail |
| C1H1g02213 | 1:27,612,406-27,615,765 | + | C2H1g01037 | CX1g002993 | LOC_Os01g53750 | Os01g0739700 | - | Detail |
| C1H1g17974 | 1:27,622,570-27,624,339 | + | C2H1g07224 | CX1g004055 | LOC_Os01g53790 | - | - | Detail |
| C1H1g15341 | 1:27,626,007-27,626,669 | + | C2H1g15894 | CX1g004055 | LOC_Os01g53790 | Os01g0740400 | - | Detail |
| C1H1g11923 | 1:27,628,320-27,633,452 | - | C2H1g04268 | CX1g000355 | LOC_Os01g53800 | Os01g0740500 | - | Detail |
| C1H1g10172 | 1:27,634,930-27,639,007 | - | C2H1g07977 | CX1g002299 | LOC_Os01g53810 | Os01g0740600 | - | Detail |
| C1H1g11507 | 1:27,642,852-27,647,621 | - | C2H1g07420 | CX1g002753 | LOC_Os01g53840 | Os01g0741200 | - | Detail |
| C1H1g08023 | 1:27,653,778-27,655,968 | + | C2H1g21659 | - | - | - | - | Detail |
| C1H1g07113 | 1:27,662,880-27,666,026 | + | C2H1g06484 | CX1g006967 | LOC_Os01g53880 | Os01g0741900 | IAA6, OsIAA6 | Detail |
| C1H1g30211 | 1:27,699,562-27,703,241 | + | C2H1g04401 | CX1g007266 | LOC_Os01g53920 | Os01g0742400 | OsASLRK | Detail |
| C1H1g16829 | 1:27,703,227-27,707,506 | - | C2H1g05690 | CX1g000337 | LOC_Os01g53930 | Os01g0742500 | OsHXK6 | Detail |
| C1H1g31036 | 1:27,709,451-27,711,043 | - | C2H1g15551 | CX1g005919 | LOC_Os01g53940 | Os01g0742766 | - | Detail |
| C1H1g12146 | 1:27,725,035-27,727,146 | + | C2H1g26459 | CX1g007218 | LOC_Os01g53980 | Os01g0743100 | - | Detail |
| C1H1g13979 | 1:27,733,408-27,736,064 | - | C2H1g30365 | CX1g003238 | LOC_Os01g53990 | Os01g0743200 | - | Detail |
| C1H1g20416 | 1:27,743,149-27,747,851 | + | C2H1g07295 | CX1g000573 | LOC_Os01g54010 | Os01g0743300 | - | Detail |
| C1H1g03969 | 1:27,747,960-27,754,344 | - | C2H1g18249 | CX1g001592 | LOC_Os01g54020 | Os01g0743400 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g038912 | 5:3,698,167-3,698,559 | + | C1H5g18279 | - | LOC_Os03g38940 | Os03g0586400 | - | Detail |
| CX5g040996 | 5:3,702,493-3,705,433 | + | C1H5g27827 | C2H5g07835 | LOC_Os05g08360 | Os05g0176000 | - | Detail |
| CX5g038136 | 5:3,709,694-3,715,199 | - | C1H5g22753 | C2H5g15897 | LOC_Os05g08370 | Os05g0176100 | - | Detail |
| CX5g040610 | 5:3,722,441-3,722,809 | - | C1H5g17509 | C2H5g00090 | LOC_Os05g08390 | Os05g0176300 | - | Detail |
| CX5g040050 | 5:3,724,727-3,727,301 | - | C1H5g02275 | C2H5g24531 | LOC_Os05g08400 | Os05g0176400 | - | Detail |
| CX5g039063 | 5:3,728,828-3,732,075 | - | C1H5g15996 | C2H5g15763 | LOC_Os05g08410 | Os05g0176500 | - | Detail |
| CX5g039906 | 5:3,732,200-3,732,690 | + | C1H5g19736 | C2H5g16673 | LOC_Os05g08414 | Os05g0176600 | - | Detail |
| CX5g037064 | 5:3,737,387-3,737,731 | - | - | - | LOC_Os05g09700 | Os05g0176700 | - | Detail |
| CX5g037141 | 5:3,742,117-3,742,476 | - | - | - | - | - | - | Detail |
| CX5g039146 | 5:3,745,752-3,753,725 | - | C1H5g07740 | C2H5g23491 | LOC_Os05g08430 | Os05g0176800 | BOR4, OsBOR4 | Detail |
| CX5g037186 | 5:3,753,821-3,755,213 | + | C1H5g26361 | C2H5g22969 | LOC_Os05g08440 | Os05g0177000 | - | Detail |
| CX5g040267 | 5:3,756,809-3,757,981 | + | C1H5g26361 | C2H5g22969 | LOC_Os05g08450 | Os05g0177100 | - | Detail |
| CX5g040323 | 5:3,760,651-3,761,624 | + | C1H5g26361 | C2H5g22969 | LOC_Os05g08450 | Os05g0177100 | - | Detail |
| CX5g041067 | 5:3,768,876-3,770,051 | - | C1H5g26361 | C2H5g14876 | LOC_Os05g08460 | Os05g0177400 | - | Detail |
| CX5g039983 | 5:3,771,775-3,773,415 | - | C1H5g12562 | C2H5g23095 | LOC_Os05g08480 | Os05g0177500 | OsUGT5 | Detail |
| CX5g040475 | 5:3,791,570-3,793,439 | + | C1H5g12562 | C2H5g23095 | LOC_Os05g08490 | Os05g0177800 | - | Detail |
| CX5g039674 | 5:3,802,314-3,803,334 | + | C1H5g05273 | C2H5g03109 | LOC_Os05g08530 | Os05g0178000 | - | Detail |
| CX5g039762 | 5:3,814,062-3,815,121 | + | C1H5g05273 | C2H5g19519 | LOC_Os05g08530 | Os05g0178000 | - | Detail |
| CX5g039149 | 5:3,817,085-3,817,405 | + | - | - | - | - | - | Detail |
| CX5g040319 | 5:3,817,940-3,819,753 | - | C1H5g26746 | C2H5g08820 | LOC_Os05g08540 | Os05g0178100 | GA3OX1, OsGA3ox1, GA3ox1, OsGA3OX1 | Detail |