| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g17232 | 5:21,641,163-21,648,321 | + | C2H5g13260 | CX5g039556 | LOC_Os05g45720 | Os05g0533600 | SSIVB, OsSSIVb, SSIV-2, OsSSIV-2, SSIVb, SSIV-2 | Detail |
| C1H5g27858 | 5:21,648,946-21,651,000 | + | C2H5g03217 | CX5g039089 | LOC_Os05g45730 | Os05g0533700 | - | Detail |
| C1H5g22620 | 5:21,652,074-21,653,596 | + | C2H5g09746 | CX5g038471 | LOC_Os05g45740 | Os05g0533800 | - | Detail |
| C1H5g12717 | 5:21,654,766-21,658,510 | + | C2H5g27500 | CX5g038527 | LOC_Os05g45750 | Os05g0533900 | - | Detail |
| C1H5g28841 | 5:21,658,953-21,660,872 | - | C2H5g28882 | CX5g040105 | LOC_Os05g45760 | Os05g0534000 | - | Detail |
| C1H5g15352 | 5:21,661,859-21,664,094 | + | C2H5g06715 | CX5g036728 | LOC_Os05g45770 | Os05g0534100 | - | Detail |
| C1H5g11246 | 5:21,673,277-21,674,219 | + | - | CX5g040134 | - | - | - | Detail |
| C1H5g21827 | 5:21,675,920-21,677,372 | + | C2H5g12404 | CX5g040749 | LOC_Os05g45810 | Os05g0534400 | OsCBL4 | Detail |
| C1H5g13213 | 5:21,677,885-21,681,504 | - | C2H5g20385 | CX5g037499 | LOC_Os05g45820 | Os05g0534500 | - | Detail |
| C1H5g03368 | 5:21,685,266-21,690,601 | - | C2H5g26781 | CX5g039192 | LOC_Os05g45830 | Os05g0534600 | - | Detail |
| C1H5g18942 | 5:21,693,054-21,698,378 | + | C2H5g01370 | CX5g040022 | LOC_Os05g45840 | Os05g0534800 | - | Detail |
| C1H5g12782 | 5:21,699,530-21,702,184 | + | C2H5g21069 | CX5g037833 | LOC_Os05g45850 | Os05g0534900 | - | Detail |
| C1H5g14563 | 5:21,705,589-21,708,813 | - | C2H5g29794 | CX5g037747 | LOC_Os05g45860 | Os05g0535100 | - | Detail |
| C1H5g01171 | 5:21,710,326-21,710,785 | + | C2H5g19676 | - | - | - | - | Detail |
| C1H5g05296 | 5:21,711,820-21,712,482 | - | C2H5g22490 | CX5g037885 | - | Os07g0631500 | - | Detail |
| C1H5g29728 | 5:21,725,141-21,728,294 | + | C2H5g10427 | CX5g038811 | LOC_Os05g45870 | Os05g0535200 | - | Detail |
| C1H5g30804 | 5:21,730,449-21,731,275 | + | C2H5g08565 | CX5g039224 | LOC_Os05g45870 | Os05g0535300 | - | Detail |
| C1H5g31590 | 5:21,733,376-21,736,850 | + | C2H5g19368 | CX5g037476 | LOC_Os05g45880 | Os05g0535400 | - | Detail |
| C1H5g15501 | 5:21,738,283-21,742,921 | + | C2H5g22595 | CX5g039666 | LOC_Os05g45890 | Os05g0535500 | AET1 | Detail |
| C1H5g07739 | 5:21,743,275-21,746,906 | - | C2H5g08199 | CX5g036985 | LOC_Os05g45900 | Os05g0535600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g038169 | 5:2,772,391-2,772,750 | - | - | - | - | - | - | Detail |
| CX5g037873 | 5:2,773,219-2,777,291 | - | C1H5g01429 | C2H5g10870 | LOC_Os05g06350 | Os05g0155601 | Imp a1b, Imp3 | Detail |
| CX5g036886 | 5:2,779,853-2,785,000 | + | C1H5g05444 | C2H5g10571 | LOC_Os05g06360 | Os05g0155700 | - | Detail |
| CX5g039776 | 5:2,789,094-2,789,249 | + | - | - | - | - | - | Detail |
| CX5g040299 | 5:2,790,858-2,792,249 | + | C1H5g08048 | C2H5g29906 | LOC_Os05g06380 | Os05g0155800 | - | Detail |
| CX5g040434 | 5:2,800,031-2,801,335 | + | C1H5g08048 | C2H5g30592 | LOC_Os05g06380 | Os05g0155800 | - | Detail |
| CX5g040933 | 5:2,805,971-2,806,171 | + | - | - | - | - | - | Detail |
| CX5g040720 | 5:2,807,222-2,809,865 | + | C1H5g20577 | C2H5g22135 | LOC_Os05g06420 | Os05g0156200 | - | Detail |
| CX5g039738 | 5:2,812,414-2,815,354 | - | C1H5g09510 | C2H5g24185 | LOC_Os05g06430 | Os05g0156300 | - | Detail |
| CX5g036765 | 5:2,823,551-2,827,515 | + | C1H5g09608 | C2H5g26310 | LOC_Os05g06440 | Os05g0156500 | - | Detail |
| CX5g037146 | 5:2,828,938-2,832,839 | - | C1H5g14046 | C2H5g19277 | LOC_Os05g06450 | Os05g0156600 | - | Detail |
| CX5g038153 | 5:2,835,544-2,841,612 | - | C1H5g24964 | C2H5g05970 | LOC_Os05g06460 | Os05g0156700 | OsLPD1 | Detail |
| CX5g038021 | 5:2,846,428-2,857,340 | + | C1H5g24978 | C2H5g20269 | LOC_Os05g06470 | Os05g0156800 | - | Detail |
| CX5g037368 | 5:2,858,632-2,862,815 | - | C1H5g24292 | C2H5g09414 | LOC_Os05g06480 | Os05g0156900 | Chalk5 | Detail |
| CX5g039839 | 5:2,867,219-2,867,746 | + | C1H5g14185 | C2H5g11031 | LOC_Os05g06490 | Os05g0157100 | - | Detail |
| CX5g037609 | 5:2,868,860-2,870,685 | - | C1H5g00102 | C2H5g11758 | LOC_Os05g06500 | Os05g0157200 | - | Detail |
| CX5g036870 | 5:2,872,766-2,876,297 | - | C1H5g31378 | C2H5g06394 | LOC_Os05g06510 | Os05g0157300 | - | Detail |
| CX5g039713 | 5:2,880,957-2,884,360 | + | C1H5g16317 | C2H5g01907 | LOC_Os05g06630 | Os05g0158200 | - | Detail |
| CX5g040970 | 5:2,889,724-2,893,878 | + | C1H5g16317 | C2H5g29731 | LOC_Os05g06540 | Os05g0157600 | - | Detail |
| CX5g038380 | 5:2,945,772-2,948,881 | + | C1H5g16317 | C2H5g15119 | LOC_Os05g06630 | Os05g0158200 | - | Detail |