| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g05227 | 3:32,575,990-32,580,536 | + | C1H3g06021 | CX3g029436 | LOC_Os03g63310 | Os03g0850200 | - | Detail |
| C2H3g17725 | 3:32,589,559-32,594,855 | + | C1H3g11487 | CX3g025643 | LOC_Os03g63330 | Os03g0850400 | - | Detail |
| C2H3g10229 | 3:32,599,342-32,600,742 | - | C1H3g23900 | CX3g025502 | LOC_Os03g63360 | Os03g0850600 | - | Detail |
| C2H3g07946 | 3:32,601,789-32,604,702 | - | C1H3g06173 | CX3g027337 | LOC_Os03g63370 | Os03g0850700 | - | Detail |
| C2H3g04851 | 3:32,608,665-32,610,652 | - | C1H3g01400 | CX3g027803 | LOC_Os03g63380 | Os03g0850800 | - | Detail |
| C2H3g19999 | 3:32,611,956-32,614,726 | + | C1H3g21756 | CX3g028883 | LOC_Os03g63400 | Os03g0851000 | - | Detail |
| C2H3g27399 | 3:32,617,185-32,620,934 | - | C1H3g04311 | CX3g025511 | LOC_Os03g63410 | Os03g0851100 | - | Detail |
| C2H3g28237 | 3:32,621,151-32,621,630 | + | C1H3g03955 | CX3g029854 | LOC_Os03g63420 | Os03g0851200 | - | Detail |
| C2H3g01754 | 3:32,623,518-32,627,549 | - | C1H3g18156 | CX3g027614 | LOC_Os03g63430 | Os03g0851300 | - | Detail |
| C2H3g16528 | 3:32,630,489-32,638,736 | + | C1H3g10494 | CX3g026223 | LOC_Os03g63440 | Os03g0851400 | - | Detail |
| C2H3g13556 | 3:32,639,716-32,644,857 | + | C1H3g11947 | CX3g028446 | LOC_Os03g63470 | Os03g0851600 | - | Detail |
| C2H3g27557 | 3:32,645,813-32,648,267 | + | C1H3g29898 | CX3g028446 | LOC_Os03g63480 | Os03g0851700 | Xbos251, XBOS251 | Detail |
| C2H3g08313 | 3:32,649,013-32,651,309 | + | C1H3g20484 | CX3g030221 | LOC_Os03g63490 | Os03g0851800 | - | Detail |
| C2H3g19287 | 3:32,652,490-32,658,988 | - | C1H3g03202 | CX3g031225 | LOC_Os03g63500 | Os03g0851900 | - | Detail |
| C2H3g14849 | 3:32,664,058-32,664,622 | - | C1H3g01639 | CX3g024991 | - | - | - | Detail |
| C2H3g22448 | 3:32,670,873-32,675,183 | - | C1H3g16711 | CX3g029990 | LOC_Os03g63520 | Os03g0852200 | - | Detail |
| C2H3g22869 | 3:32,677,995-32,680,871 | + | C1H3g08912 | CX3g027065 | LOC_Os03g63530 | Os03g0852300 | - | Detail |
| C2H3g22131 | 3:32,684,822-32,686,437 | - | C1H3g05162 | - | LOC_Os03g63550 | Os03g0852500 | - | Detail |
| C2H3g11356 | 3:32,687,020-32,688,191 | + | C1H3g10475 | CX3g031065 | LOC_Os03g63554 | Os03g0852600 | - | Detail |
| C2H3g06256 | 3:32,695,811-32,698,824 | - | C1H3g26435 | CX3g031167 | LOC_Os03g63590 | Os03g0852900 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g040806 | 5:1,400,665-1,400,913 | - | - | - | - | - | - | Detail |
| CX5g037246 | 5:1,408,796-1,410,610 | + | C1H5g07604 | C2H5g01621 | LOC_Os05g03760 | Os05g0128200 | - | Detail |
| CX5g039214 | 5:1,413,280-1,415,249 | - | C1H5g14002 | C2H5g10735 | LOC_Os05g03770 | Os05g0128300 | - | Detail |
| CX5g038112 | 5:1,421,166-1,424,344 | - | C1H5g27203 | C2H5g15512 | LOC_Os05g03780 | Os05g0128400 | OsMTP1 | Detail |
| CX5g038478 | 5:1,430,587-1,430,751 | - | - | - | - | - | - | Detail |
| CX5g037955 | 5:1,432,212-1,432,370 | + | - | - | - | - | - | Detail |
| CX5g039031 | 5:1,436,510-1,437,082 | - | - | - | - | - | - | Detail |
| CX5g037779 | 5:1,440,417-1,444,194 | + | C1H5g26071 | C2H5g12644 | LOC_Os05g03820 | Os05g0129000 | - | Detail |
| CX5g036800 | 5:1,447,739-1,449,602 | + | C1H5g17726 | C2H5g20670 | LOC_Os05g03830 | Os05g0129100 | - | Detail |
| CX5g040768 | 5:1,449,900-1,452,255 | - | C1H5g20738 | C2H5g08741 | LOC_Os05g03840 | Os05g0129200 | - | Detail |
| CX5g040505 | 5:1,454,472-1,454,625 | + | - | - | - | Os05g0172000 | - | Detail |
| CX5g039316 | 5:1,459,771-1,460,253 | - | - | - | - | - | - | Detail |
| CX5g038529 | 5:1,463,824-1,471,005 | + | C1H5g06409 | C2H5g12888 | - | Os05g0575400 | - | Detail |
| CX5g038179 | 5:1,474,143-1,479,862 | - | C1H5g14331 | C2H5g24745 | LOC_Os05g03884 | Os05g0129700 | Oskn2, OSH71, Oskn2/OSH71 | Detail |
| CX5g037378 | 5:1,488,862-1,489,014 | - | - | - | - | - | - | Detail |
| CX5g037909 | 5:1,493,520-1,494,358 | + | C1H5g11198 | C2H5g10940 | LOC_Os05g03900 | Os05g0129800 | - | Detail |
| CX5g038918 | 5:1,495,052-1,501,021 | - | C1H5g15292 | C2H5g13765 | LOC_Os05g03910 | Os05g0129900 | - | Detail |
| CX5g037263 | 5:1,500,833-1,502,059 | + | C1H3g03993 | C2H5g03241 | LOC_Os12g34990 | Os12g0535400 | - | Detail |
| CX5g036768 | 5:1,506,256-1,510,031 | + | C1H5g09306 | C2H5g20349 | LOC_Os05g03920 | Os05g0130100 | - | Detail |
| CX5g036838 | 5:1,516,301-1,516,531 | + | - | - | LOC_Os05g03934 | Os05g0130200 | - | Detail |