| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H2g07816 | 2:796,704-798,098 | + | C1H2g27838 | CX2g022255 | LOC_Os02g02550 | Os02g0117600 | - | Detail |
| C2H2g13889 | 2:798,455-800,921 | - | C1H2g18994 | CX2g022630 | LOC_Os02g02560 | Os02g0117700 | UGP2, Ugp2, OsUgp2 | Detail |
| C2H2g01328 | 2:801,105-801,991 | - | C1H2g27291 | CX2g022630 | LOC_Os02g02560 | Os02g0117700 | UGP2, Ugp2, OsUgp2 | Detail |
| C2H2g04865 | 2:802,381-805,414 | - | C1H2g13917 | CX2g020750 | LOC_Os02g02570 | Os02g0117800 | - | Detail |
| C2H2g03572 | 2:805,971-808,822 | - | C1H2g28901 | CX2g021321 | LOC_Os02g02580 | Os02g0117900 | - | Detail |
| C2H2g23604 | 2:809,559-814,381 | - | C1H2g26410 | CX2g020200 | LOC_Os02g02590 | Os02g0118000 | - | Detail |
| C2H2g20482 | 2:820,789-824,437 | + | C1H2g14131 | CX2g022002 | LOC_Os02g02600 | Os02g0118200 | - | Detail |
| C2H2g03661 | 2:826,527-829,953 | + | C1H2g21041 | CX2g023780 | LOC_Os02g02620 | Os02g0118400 | - | Detail |
| C2H2g03830 | 2:832,541-835,817 | + | C1H2g27073 | CX2g020837 | LOC_Os02g02640 | Os02g0261400 | - | Detail |
| C2H2g06996 | 2:840,084-843,608 | + | C1H2g27073 | CX2g020837 | LOC_Os02g02660 | Os02g0118875 | - | Detail |
| C2H2g29328 | 2:854,266-858,052 | + | C1H2g13836 | CX2g023953 | LOC_Os02g02660 | Os02g0118800 | - | Detail |
| C2H2g29016 | 2:861,749-867,137 | + | C1H2g31106 | CX2g023953 | LOC_Os02g02670 | Os02g0118875 | - | Detail |
| C2H2g24393 | 2:869,778-873,137 | - | C1H2g06717 | CX2g020574 | LOC_Os02g02690 | Os02g0119100 | - | Detail |
| C2H2g13062 | 2:875,504-877,737 | + | C1H2g11285 | CX2g021766 | LOC_Os02g02700 | Os02g0119200 | - | Detail |
| C2H2g01999 | 2:879,580-884,104 | + | C1H2g31576 | CX2g021571 | LOC_Os02g02710 | Os02g0119300 | - | Detail |
| C2H2g01380 | 2:884,483-886,524 | - | C1H2g05266 | CX2g022479 | LOC_Os02g02720 | Os02g0119400 | - | Detail |
| C2H2g12007 | 2:891,645-895,933 | + | C1H2g20562 | CX2g024691 | LOC_Os02g02730 | Os02g0119600 | - | Detail |
| C2H2g25669 | 2:902,683-907,951 | + | C1H2g24600 | CX2g022368 | LOC_Os02g02750 | Os02g0119800 | - | Detail |
| C2H2g11965 | 2:910,240-912,647 | - | C1H2g28732 | CX2g019994 | LOC_Os02g02770 | Os02g0120000 | - | Detail |
| C2H2g11030 | 2:913,694-919,253 | - | C1H2g27768 | CX2g020984 | LOC_Os02g02780 | Os02g0120100 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g040806 | 5:1,400,665-1,400,913 | - | - | - | - | - | - | Detail |
| CX5g037246 | 5:1,408,796-1,410,610 | + | C1H5g07604 | C2H5g01621 | LOC_Os05g03760 | Os05g0128200 | - | Detail |
| CX5g039214 | 5:1,413,280-1,415,249 | - | C1H5g14002 | C2H5g10735 | LOC_Os05g03770 | Os05g0128300 | - | Detail |
| CX5g038112 | 5:1,421,166-1,424,344 | - | C1H5g27203 | C2H5g15512 | LOC_Os05g03780 | Os05g0128400 | OsMTP1 | Detail |
| CX5g038478 | 5:1,430,587-1,430,751 | - | - | - | - | - | - | Detail |
| CX5g037955 | 5:1,432,212-1,432,370 | + | - | - | - | - | - | Detail |
| CX5g039031 | 5:1,436,510-1,437,082 | - | - | - | - | - | - | Detail |
| CX5g037779 | 5:1,440,417-1,444,194 | + | C1H5g26071 | C2H5g12644 | LOC_Os05g03820 | Os05g0129000 | - | Detail |
| CX5g036800 | 5:1,447,739-1,449,602 | + | C1H5g17726 | C2H5g20670 | LOC_Os05g03830 | Os05g0129100 | - | Detail |
| CX5g040768 | 5:1,449,900-1,452,255 | - | C1H5g20738 | C2H5g08741 | LOC_Os05g03840 | Os05g0129200 | - | Detail |
| CX5g040505 | 5:1,454,472-1,454,625 | + | - | - | - | Os05g0172000 | - | Detail |
| CX5g039316 | 5:1,459,771-1,460,253 | - | - | - | - | - | - | Detail |
| CX5g038529 | 5:1,463,824-1,471,005 | + | C1H5g06409 | C2H5g12888 | - | Os05g0575400 | - | Detail |
| CX5g038179 | 5:1,474,143-1,479,862 | - | C1H5g14331 | C2H5g24745 | LOC_Os05g03884 | Os05g0129700 | Oskn2, OSH71, Oskn2/OSH71 | Detail |
| CX5g037378 | 5:1,488,862-1,489,014 | - | - | - | - | - | - | Detail |
| CX5g037909 | 5:1,493,520-1,494,358 | + | C1H5g11198 | C2H5g10940 | LOC_Os05g03900 | Os05g0129800 | - | Detail |
| CX5g038918 | 5:1,495,052-1,501,021 | - | C1H5g15292 | C2H5g13765 | LOC_Os05g03910 | Os05g0129900 | - | Detail |
| CX5g037263 | 5:1,500,833-1,502,059 | + | C1H3g03993 | C2H5g03241 | LOC_Os12g34990 | Os12g0535400 | - | Detail |
| CX5g036768 | 5:1,506,256-1,510,031 | + | C1H5g09306 | C2H5g20349 | LOC_Os05g03920 | Os05g0130100 | - | Detail |
| CX5g036838 | 5:1,516,301-1,516,531 | + | - | - | LOC_Os05g03934 | Os05g0130200 | - | Detail |