| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g15956 | 1:29,170,228-29,173,645 | - | C1H1g07828 | CX1g003614 | LOC_Os01g56610 | Os01g0772900 | - | Detail |
| C2H1g02136 | 1:29,173,682-29,173,900 | - | C1H1g30082 | - | LOC_Os01g56610 | Os01g0772900 | - | Detail |
| C2H1g09458 | 1:29,176,950-29,183,491 | - | C1H1g09709 | CX1g004434 | LOC_Os01g56620 | Os01g0773000 | - | Detail |
| C2H1g21996 | 1:29,186,529-29,193,189 | + | C1H1g18004 | CX1g004749 | LOC_Os01g56630 | Os01g0773100 | - | Detail |
| C2H1g11734 | 1:29,193,639-29,198,491 | - | C1H1g16449 | CX1g003963 | LOC_Os01g56640 | Os01g0773200 | - | Detail |
| C2H1g10774 | 1:29,210,331-29,214,923 | + | C1H1g12399 | CX1g004844 | LOC_Os01g56660 | Os01g0773400 | - | Detail |
| C2H1g03074 | 1:29,216,871-29,226,330 | + | C1H1g25447 | CX1g006651 | LOC_Os01g56670 | Os01g0773600 | - | Detail |
| C2H1g21720 | 1:29,226,511-29,226,982 | - | C1H1g04938 | CX1g003264 | LOC_Os01g56680 | Os01g0773700 | - | Detail |
| C2H1g17726 | 1:29,231,475-29,233,392 | + | C1H1g10427 | CX1g001968 | LOC_Os01g56690 | Os01g0773800 | - | Detail |
| C2H1g17588 | 1:29,253,985-29,255,375 | + | C1H1g31091 | CX1g000210 | LOC_Os01g56730 | Os01g0774200 | - | Detail |
| C2H1g05538 | 1:29,258,827-29,263,431 | - | C1H1g22747 | CX1g003188 | LOC_Os01g56764 | Os01g0774500 | - | Detail |
| C2H1g19867 | 1:29,264,809-29,270,524 | - | C1H1g31324 | CX1g002704 | LOC_Os01g56780 | Os01g0775100 | OsPL3 | Detail |
| C2H1g25542 | 1:29,280,778-29,285,466 | + | C1H1g21773 | CX1g002735 | LOC_Os01g56790 | - | - | Detail |
| C2H1g25551 | 1:29,285,804-29,295,830 | - | C1H1g07124 | CX1g006221 | LOC_Os01g56800 | Os01g0775300 | - | Detail |
| C2H1g29104 | 1:29,304,566-29,305,249 | - | C1H1g18472 | CX1g003603 | LOC_Os01g56810 | Os01g0775400 | OsCKX5 | Detail |
| C2H1g14598 | 1:29,305,652-29,306,817 | - | C1H1g18472 | CX1g003603 | LOC_Os01g56810 | Os01g0775400 | OsCKX5 | Detail |
| C2H1g15615 | 1:29,307,389-29,308,573 | - | C1H1g18472 | CX1g003603 | LOC_Os01g56810 | Os01g0775400 | OsCKX5 | Detail |
| C2H1g13983 | 1:29,328,642-29,336,924 | - | C1H1g22596 | CX1g005751 | LOC_Os01g51050 | Os01g0775500 | - | Detail |
| C2H1g14722 | 1:29,345,950-29,350,017 | - | C1H1g06438 | CX1g001413 | LOC_Os01g56860 | Os01g0776400 | - | Detail |
| C2H1g29532 | 1:29,352,350-29,355,916 | + | C1H1g27574 | CX1g006332 | LOC_Os01g56870 | Os01g0776500 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g040806 | 5:1,400,665-1,400,913 | - | - | - | - | - | - | Detail |
| CX5g037246 | 5:1,408,796-1,410,610 | + | C1H5g07604 | C2H5g01621 | LOC_Os05g03760 | Os05g0128200 | - | Detail |
| CX5g039214 | 5:1,413,280-1,415,249 | - | C1H5g14002 | C2H5g10735 | LOC_Os05g03770 | Os05g0128300 | - | Detail |
| CX5g038112 | 5:1,421,166-1,424,344 | - | C1H5g27203 | C2H5g15512 | LOC_Os05g03780 | Os05g0128400 | OsMTP1 | Detail |
| CX5g038478 | 5:1,430,587-1,430,751 | - | - | - | - | - | - | Detail |
| CX5g037955 | 5:1,432,212-1,432,370 | + | - | - | - | - | - | Detail |
| CX5g039031 | 5:1,436,510-1,437,082 | - | - | - | - | - | - | Detail |
| CX5g037779 | 5:1,440,417-1,444,194 | + | C1H5g26071 | C2H5g12644 | LOC_Os05g03820 | Os05g0129000 | - | Detail |
| CX5g036800 | 5:1,447,739-1,449,602 | + | C1H5g17726 | C2H5g20670 | LOC_Os05g03830 | Os05g0129100 | - | Detail |
| CX5g040768 | 5:1,449,900-1,452,255 | - | C1H5g20738 | C2H5g08741 | LOC_Os05g03840 | Os05g0129200 | - | Detail |
| CX5g040505 | 5:1,454,472-1,454,625 | + | - | - | - | Os05g0172000 | - | Detail |
| CX5g039316 | 5:1,459,771-1,460,253 | - | - | - | - | - | - | Detail |
| CX5g038529 | 5:1,463,824-1,471,005 | + | C1H5g06409 | C2H5g12888 | - | Os05g0575400 | - | Detail |
| CX5g038179 | 5:1,474,143-1,479,862 | - | C1H5g14331 | C2H5g24745 | LOC_Os05g03884 | Os05g0129700 | Oskn2, OSH71, Oskn2/OSH71 | Detail |
| CX5g037378 | 5:1,488,862-1,489,014 | - | - | - | - | - | - | Detail |
| CX5g037909 | 5:1,493,520-1,494,358 | + | C1H5g11198 | C2H5g10940 | LOC_Os05g03900 | Os05g0129800 | - | Detail |
| CX5g038918 | 5:1,495,052-1,501,021 | - | C1H5g15292 | C2H5g13765 | LOC_Os05g03910 | Os05g0129900 | - | Detail |
| CX5g037263 | 5:1,500,833-1,502,059 | + | C1H3g03993 | C2H5g03241 | LOC_Os12g34990 | Os12g0535400 | - | Detail |
| CX5g036768 | 5:1,506,256-1,510,031 | + | C1H5g09306 | C2H5g20349 | LOC_Os05g03920 | Os05g0130100 | - | Detail |
| CX5g036838 | 5:1,516,301-1,516,531 | + | - | - | LOC_Os05g03934 | Os05g0130200 | - | Detail |