| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g15039 | 5:12,828,957-12,830,828 | + | C2H5g28661 | CX5g040774 | LOC_Os05g27730 | Os05g0343400 | WRKY53, OsWRKY53 | Detail |
| C1H5g04216 | 5:12,834,512-12,835,555 | - | C2H5g16881 | CX5g038974 | LOC_Os05g27740 | - | - | Detail |
| C1H5g25967 | 5:12,844,306-12,845,569 | + | C2H5g15026 | - | - | - | - | Detail |
| C1H5g00690 | 5:12,865,309-12,870,596 | + | C2H5g02617 | CX5g039180 | LOC_Os05g28090 | Os05g0348100 | OsNdhl | Detail |
| C1H5g23669 | 5:12,871,966-12,872,455 | - | C2H5g26312 | CX5g039491 | - | Os05g0588300 | - | Detail |
| C1H5g19699 | 5:12,903,347-12,904,201 | + | C2H5g18593 | CX5g039840 | LOC_Os05g28040 | Os05g0347400 | OsG1L9 | Detail |
| C1H5g17201 | 5:12,920,650-12,923,329 | + | C2H5g24655 | CX5g038657 | LOC_Os05g28010 | Os05g0347000 | - | Detail |
| C1H5g26235 | 5:12,938,982-12,939,672 | + | C2H5g25283 | CX5g041112 | LOC_Os05g27980 | Os05g0346800 | - | Detail |
| C1H5g30238 | 5:12,943,741-12,950,452 | + | C2H5g25338 | CX5g037334 | LOC_Os05g27960 | Os05g0346500 | Endo-Os | Detail |
| C1H5g26042 | 5:12,953,336-12,957,651 | - | C2H5g21564 | CX5g037807 | LOC_Os05g27950 | Os05g0346400 | - | Detail |
| C1H5g02425 | 5:12,958,100-12,961,072 | + | C2H5g17547 | CX5g037658 | LOC_Os05g27940 | Os05g0346300 | - | Detail |
| C1H5g00367 | 5:12,963,731-12,967,018 | + | C2H5g29783 | CX5g041046 | LOC_Os05g27930 | Os05g0346200 | OsDREB2B | Detail |
| C1H5g21070 | 5:12,968,768-12,975,729 | - | C2H5g22054 | CX5g039687 | LOC_Os05g27920 | Os05g0346100 | - | Detail |
| C1H5g30213 | 5:12,989,404-12,989,985 | + | C2H5g22004 | CX5g039960 | LOC_Os05g27890 | Os05g0345700 | - | Detail |
| C1H5g28263 | 5:12,991,248-12,992,229 | + | C2H5g21940 | CX5g039960 | LOC_Os05g27890 | Os05g0345700 | - | Detail |
| C1H5g11256 | 5:12,995,064-13,002,071 | + | C2H5g05395 | CX5g038275 | LOC_Os05g27880 | Os05g0345500 | - | Detail |
| C1H5g03976 | 5:13,004,740-13,016,822 | + | C2H5g03667 | CX5g039058 | LOC_Os05g27870 | Os05g0345400 | - | Detail |
| C1H5g26971 | 5:13,050,293-13,054,393 | - | C2H5g28639 | CX5g038888 | LOC_Os05g27820 | Os05g0345100 | OsSec14-14 | Detail |
| C1H5g06134 | 5:13,081,043-13,081,333 | + | C2H5g26086 | CX5g040808 | LOC_Os05g27790 | Os05g0344400 | - | Detail |
| C1H5g05160 | 5:13,081,412-13,083,530 | + | C2H5g01225 | CX5g040808 | LOC_Os05g27790 | Os05g0344400 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g040806 | 5:1,400,665-1,400,913 | - | - | - | - | - | - | Detail |
| CX5g037246 | 5:1,408,796-1,410,610 | + | C1H5g07604 | C2H5g01621 | LOC_Os05g03760 | Os05g0128200 | - | Detail |
| CX5g039214 | 5:1,413,280-1,415,249 | - | C1H5g14002 | C2H5g10735 | LOC_Os05g03770 | Os05g0128300 | - | Detail |
| CX5g038112 | 5:1,421,166-1,424,344 | - | C1H5g27203 | C2H5g15512 | LOC_Os05g03780 | Os05g0128400 | OsMTP1 | Detail |
| CX5g038478 | 5:1,430,587-1,430,751 | - | - | - | - | - | - | Detail |
| CX5g037955 | 5:1,432,212-1,432,370 | + | - | - | - | - | - | Detail |
| CX5g039031 | 5:1,436,510-1,437,082 | - | - | - | - | - | - | Detail |
| CX5g037779 | 5:1,440,417-1,444,194 | + | C1H5g26071 | C2H5g12644 | LOC_Os05g03820 | Os05g0129000 | - | Detail |
| CX5g036800 | 5:1,447,739-1,449,602 | + | C1H5g17726 | C2H5g20670 | LOC_Os05g03830 | Os05g0129100 | - | Detail |
| CX5g040768 | 5:1,449,900-1,452,255 | - | C1H5g20738 | C2H5g08741 | LOC_Os05g03840 | Os05g0129200 | - | Detail |
| CX5g040505 | 5:1,454,472-1,454,625 | + | - | - | - | Os05g0172000 | - | Detail |
| CX5g039316 | 5:1,459,771-1,460,253 | - | - | - | - | - | - | Detail |
| CX5g038529 | 5:1,463,824-1,471,005 | + | C1H5g06409 | C2H5g12888 | - | Os05g0575400 | - | Detail |
| CX5g038179 | 5:1,474,143-1,479,862 | - | C1H5g14331 | C2H5g24745 | LOC_Os05g03884 | Os05g0129700 | Oskn2, OSH71, Oskn2/OSH71 | Detail |
| CX5g037378 | 5:1,488,862-1,489,014 | - | - | - | - | - | - | Detail |
| CX5g037909 | 5:1,493,520-1,494,358 | + | C1H5g11198 | C2H5g10940 | LOC_Os05g03900 | Os05g0129800 | - | Detail |
| CX5g038918 | 5:1,495,052-1,501,021 | - | C1H5g15292 | C2H5g13765 | LOC_Os05g03910 | Os05g0129900 | - | Detail |
| CX5g037263 | 5:1,500,833-1,502,059 | + | C1H3g03993 | C2H5g03241 | LOC_Os12g34990 | Os12g0535400 | - | Detail |
| CX5g036768 | 5:1,506,256-1,510,031 | + | C1H5g09306 | C2H5g20349 | LOC_Os05g03920 | Os05g0130100 | - | Detail |
| CX5g036838 | 5:1,516,301-1,516,531 | + | - | - | LOC_Os05g03934 | Os05g0130200 | - | Detail |