| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g13243 | 1:25,204,245-25,205,597 | + | C2H1g16101 | CX1g000245 | LOC_Os01g49260 | Os01g0686500 | - | Detail |
| C1H1g17217 | 1:25,209,965-25,212,286 | + | C2H1g11919 | CX1g005008 | LOC_Os01g49270 | Os01g0686600 | - | Detail |
| C1H1g23518 | 1:25,212,939-25,214,873 | - | C2H1g06792 | CX1g006716 | LOC_Os01g49280 | Os01g0686700 | - | Detail |
| C1H1g28000 | 1:25,219,332-25,221,680 | + | C2H1g18988 | CX1g000667 | LOC_Os01g49290 | Os01g0686800 | - | Detail |
| C1H1g24973 | 1:25,225,480-25,230,660 | + | C2H1g26696 | CX1g006327 | LOC_Os01g49310 | Os01g0687300 | - | Detail |
| C1H1g17002 | 1:25,235,048-25,235,983 | - | C2H1g29685 | CX1g004166 | LOC_Os01g49320 | Os01g0687400 | - | Detail |
| C1H1g24886 | 1:25,239,103-25,240,014 | - | C2H1g15847 | CX1g002308 | LOC_Os01g49320 | Os01g0687400 | - | Detail |
| C1H1g25078 | 1:25,245,330-25,249,334 | + | C2H1g12257 | CX1g002582 | LOC_Os01g49330 | Os01g0687500 | - | Detail |
| C1H1g30547 | 1:25,251,784-25,254,003 | - | C2H1g24499 | CX1g004001 | LOC_Os01g49340 | Os01g0687600 | - | Detail |
| C1H1g13249 | 1:25,254,697-25,257,459 | - | C2H1g11352 | CX1g004559 | LOC_Os01g49350 | Os01g0687700 | - | Detail |
| C1H1g18645 | 1:25,259,350-25,262,648 | - | C2H1g17351 | CX1g000658 | LOC_Os01g49360 | Os01g0687800 | - | Detail |
| C1H1g03295 | 1:25,264,251-25,264,802 | - | C2H1g02129 | CX1g006320 | - | - | - | Detail |
| C1H1g06737 | 1:25,266,738-25,269,722 | - | C2H1g03797 | CX1g000285 | LOC_Os01g49380 | Os01g0688200 | - | Detail |
| C1H1g05158 | 1:25,299,574-25,300,336 | - | C2H1g16538 | CX1g004118 | LOC_Os01g49410 | Os01g0688600 | - | Detail |
| C1H1g14442 | 1:25,302,337-25,304,275 | - | C2H1g05242 | CX1g004763 | LOC_Os01g49430 | Os01g0688900 | - | Detail |
| C1H1g07960 | 1:25,308,175-25,309,116 | + | C2H1g18382 | CX1g005316 | LOC_Os01g49440 | Os01g0689000 | - | Detail |
| C1H1g27870 | 1:25,322,708-25,333,831 | - | C2H1g18558 | CX1g000580 | LOC_Os01g49470 | Os01g0689451 | OsHRZ1 | Detail |
| C1H1g26809 | 1:25,342,808-25,345,965 | - | C2H1g12129 | CX1g003352 | LOC_Os01g49490 | Os01g0689600 | - | Detail |
| C1H1g26834 | 1:25,360,265-25,363,213 | + | C2H1g09258 | CX1g005650 | LOC_Os01g49510 | Os01g0689800 | - | Detail |
| C1H1g04543 | 1:25,363,774-25,368,887 | - | C2H1g12314 | CX1g005155 | LOC_Os01g49529 | Os01g0136400 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g040806 | 5:1,400,665-1,400,913 | - | - | - | - | - | - | Detail |
| CX5g037246 | 5:1,408,796-1,410,610 | + | C1H5g07604 | C2H5g01621 | LOC_Os05g03760 | Os05g0128200 | - | Detail |
| CX5g039214 | 5:1,413,280-1,415,249 | - | C1H5g14002 | C2H5g10735 | LOC_Os05g03770 | Os05g0128300 | - | Detail |
| CX5g038112 | 5:1,421,166-1,424,344 | - | C1H5g27203 | C2H5g15512 | LOC_Os05g03780 | Os05g0128400 | OsMTP1 | Detail |
| CX5g038478 | 5:1,430,587-1,430,751 | - | - | - | - | - | - | Detail |
| CX5g037955 | 5:1,432,212-1,432,370 | + | - | - | - | - | - | Detail |
| CX5g039031 | 5:1,436,510-1,437,082 | - | - | - | - | - | - | Detail |
| CX5g037779 | 5:1,440,417-1,444,194 | + | C1H5g26071 | C2H5g12644 | LOC_Os05g03820 | Os05g0129000 | - | Detail |
| CX5g036800 | 5:1,447,739-1,449,602 | + | C1H5g17726 | C2H5g20670 | LOC_Os05g03830 | Os05g0129100 | - | Detail |
| CX5g040768 | 5:1,449,900-1,452,255 | - | C1H5g20738 | C2H5g08741 | LOC_Os05g03840 | Os05g0129200 | - | Detail |
| CX5g040505 | 5:1,454,472-1,454,625 | + | - | - | - | Os05g0172000 | - | Detail |
| CX5g039316 | 5:1,459,771-1,460,253 | - | - | - | - | - | - | Detail |
| CX5g038529 | 5:1,463,824-1,471,005 | + | C1H5g06409 | C2H5g12888 | - | Os05g0575400 | - | Detail |
| CX5g038179 | 5:1,474,143-1,479,862 | - | C1H5g14331 | C2H5g24745 | LOC_Os05g03884 | Os05g0129700 | Oskn2, OSH71, Oskn2/OSH71 | Detail |
| CX5g037378 | 5:1,488,862-1,489,014 | - | - | - | - | - | - | Detail |
| CX5g037909 | 5:1,493,520-1,494,358 | + | C1H5g11198 | C2H5g10940 | LOC_Os05g03900 | Os05g0129800 | - | Detail |
| CX5g038918 | 5:1,495,052-1,501,021 | - | C1H5g15292 | C2H5g13765 | LOC_Os05g03910 | Os05g0129900 | - | Detail |
| CX5g037263 | 5:1,500,833-1,502,059 | + | C1H3g03993 | C2H5g03241 | LOC_Os12g34990 | Os12g0535400 | - | Detail |
| CX5g036768 | 5:1,506,256-1,510,031 | + | C1H5g09306 | C2H5g20349 | LOC_Os05g03920 | Os05g0130100 | - | Detail |
| CX5g036838 | 5:1,516,301-1,516,531 | + | - | - | LOC_Os05g03934 | Os05g0130200 | - | Detail |