| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g21044 | 3:28,407,285-28,411,963 | + | C2H3g05635 | CX3g026362 | LOC_Os03g52840 | Os03g0738400 | - | Detail |
| C1H3g07947 | 3:28,426,568-28,430,229 | + | C2H3g05845 | CX3g025013 | LOC_Os03g52860 | Os03g0738600 | LOX-L2, OsLOX-L2, LOX1.1, LOX L-2, OsLOX2 | Detail |
| C1H3g24267 | 3:28,436,712-28,439,660 | + | C2H3g02923 | CX3g030893 | LOC_Os03g52880 | Os03g0738900 | - | Detail |
| C1H3g14490 | 3:28,448,580-28,450,347 | + | C2H3g01404 | CX3g028113 | LOC_Os03g52910 | Os03g0739700 | - | Detail |
| C1H3g22532 | 3:28,479,943-28,483,987 | + | C2H3g15580 | CX3g026120 | LOC_Os03g52970 | Os03g0740600 | - | Detail |
| C1H3g30167 | 3:28,484,903-28,489,513 | + | C2H3g17064 | CX3g027471 | LOC_Os03g52980 | Os03g0740700 | - | Detail |
| C1H3g01871 | 3:28,493,632-28,496,160 | + | C2H3g00686 | CX3g027476 | LOC_Os03g53000 | Os03g0740800 | - | Detail |
| C1H3g26768 | 3:28,496,541-28,500,749 | + | C2H3g21662 | - | - | - | - | Detail |
| C1H3g08757 | 3:28,507,086-28,509,286 | + | C2H3g06591 | CX3g029988 | LOC_Os03g53020 | Os03g0741100 | OsbHLH148 | Detail |
| C1H3g07900 | 3:28,523,241-28,526,391 | + | C2H3g29971 | CX3g029674 | LOC_Os03g53050 | Os03g0741400 | - | Detail |
| C1H3g12278 | 3:28,532,123-28,533,453 | - | C2H3g23101 | - | - | Os03g0741525 | - | Detail |
| C1H3g27808 | 3:28,544,091-28,544,348 | + | C2H3g26390 | CX3g026540 | - | - | - | Detail |
| C1H3g17107 | 3:28,546,837-28,551,431 | - | C2H3g15523 | CX3g028122 | LOC_Os03g53080 | Os03g0741700 | - | Detail |
| C1H3g25937 | 3:28,551,328-28,551,737 | + | C2H3g20852 | - | - | - | - | Detail |
| C1H3g11146 | 3:28,559,552-28,560,637 | + | C2H3g21579 | CX3g030571 | LOC_Os03g53100 | Os03g0742300 | - | Detail |
| C1H3g09898 | 3:28,561,931-28,566,717 | - | C2H3g18927 | CX3g025479 | LOC_Os03g53110 | Os03g0742400 | - | Detail |
| C1H3g03745 | 3:28,574,781-28,575,712 | + | C2H3g26757 | CX3g029167 | - | - | - | Detail |
| C1H3g23529 | 3:28,576,537-28,582,153 | + | C2H3g15149 | CX3g030577 | LOC_Os03g53140 | Os03g0742800 | - | Detail |
| C1H3g12201 | 3:28,581,074-28,583,176 | - | C2H3g27219 | CX3g026971 | LOC_Os03g53150 | Os03g0742900 | - | Detail |
| C1H3g22035 | 3:28,584,836-28,585,219 | + | C2H3g13028 | - | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g040132 | 5:1,243,252-1,244,415 | - | - | - | LOC_Os05g03440 | Os05g0125100 | - | Detail |
| CX5g040525 | 5:1,250,358-1,250,531 | + | - | - | - | Os05g0172000 | - | Detail |
| CX5g036930 | 5:1,257,507-1,259,816 | + | C1H5g10690 | C2H5g23356 | LOC_Os05g03450 | Os05g0125200 | OsLecRK-VIII.2 | Detail |
| CX5g039053 | 5:1,265,154-1,267,572 | + | C1H5g24277 | C2H5g18270 | LOC_Os05g03460 | Os05g0125300 | - | Detail |
| CX5g037481 | 5:1,270,383-1,272,546 | + | C1H5g26628 | C2H5g03114 | LOC_Os05g03460 | Os05g0125400 | - | Detail |
| CX5g037482 | 5:1,273,486-1,273,650 | - | C1H6g22505 | C2H3g21623 | - | - | - | Detail |
| CX5g038585 | 5:1,274,689-1,278,282 | - | C1H5g28044 | C2H5g07081 | LOC_Os05g03480 | Os05g0125500 | - | Detail |
| CX5g041114 | 5:1,280,883-1,282,091 | + | C1H5g16907 | C2H5g15702 | LOC_Os05g03490 | Os05g0125600 | - | Detail |
| CX5g040091 | 5:1,284,791-1,284,973 | - | - | - | - | - | - | Detail |
| CX5g040791 | 5:1,299,202-1,301,652 | + | C1H5g08227 | C2H5g25895 | LOC_Os05g03530 | Os05g0126100 | OsTET8 | Detail |
| CX5g038217 | 5:1,303,522-1,304,985 | - | C1H5g16923 | C2H5g27890 | LOC_Os05g03540 | Os05g0126200 | - | Detail |
| CX5g038706 | 5:1,306,152-1,306,349 | + | - | - | - | - | - | Detail |
| CX5g037854 | 5:1,307,262-1,313,675 | - | C1H5g09990 | C2H5g16906 | LOC_Os05g03550 | Os05g0126300 | - | Detail |
| CX5g039859 | 5:1,334,995-1,335,694 | - | C1H5g11514 | C2H5g04841 | LOC_Os05g03590 | Os05g0126800 | - | Detail |
| CX5g040853 | 5:1,342,161-1,348,789 | + | C1H5g16424 | C2H5g26559 | LOC_Os05g03610 | Os05g0127200 | - | Detail |
| CX5g037951 | 5:1,355,540-1,358,008 | - | - | - | - | - | - | Detail |
| CX5g040335 | 5:1,361,868-1,365,297 | + | C1H5g22704 | C2H5g02917 | LOC_Os05g03630 | Os05g0562300 | - | Detail |
| CX5g039622 | 5:1,370,255-1,375,508 | - | C1H5g17694 | C2H5g01454 | LOC_Os05g03640 | Os05g0127500 | - | Detail |
| CX5g040372 | 5:1,390,342-1,391,343 | + | - | - | LOC_Os05g03740 | Os05g0128000 | - | Detail |
| CX5g040566 | 5:1,398,283-1,399,755 | + | C1H5g12303 | C2H5g05001 | LOC_Os05g03750 | Os05g0128100 | - | Detail |