| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g04522 | 1:14,823,609-14,823,836 | + | C2H1g24212 | CX1g002160 | LOC_Os01g28980 | Os01g0386600 | - | Detail |
| C1H1g19328 | 1:14,912,960-14,915,459 | - | C2H1g03263 | CX1g000939 | LOC_Os01g29150 | Os01g0388000 | OsCYP734A6, BLA2 | Detail |
| C1H1g00831 | 1:14,986,051-14,987,180 | - | - | - | - | Os01g0388200 | - | Detail |
| C1H1g22044 | 1:15,002,531-15,007,321 | + | C2H1g04945 | - | LOC_Os01g29220 | - | - | Detail |
| C1H1g02613 | 1:15,018,411-15,023,797 | + | C2H1g27614 | CX1g005727 | LOC_Os01g29230 | Os01g0388500 | - | Detail |
| C1H1g22138 | 1:15,110,108-15,123,620 | + | C2H1g16964 | CX1g000137 | LOC_Os01g29409 | Os01g0390400 | - | Detail |
| C1H1g15888 | 1:15,176,199-15,177,230 | - | C2H1g18964 | - | LOC_Os01g29469 | Os01g0390900 | - | Detail |
| C1H1g13800 | 1:15,181,966-15,183,039 | - | C2H1g01088 | CX1g001981 | LOC_Os01g29469 | Os01g0390900 | - | Detail |
| C1H1g19494 | 1:15,183,422-15,183,831 | - | - | - | - | - | - | Detail |
| C1H1g10294 | 1:15,248,713-15,249,521 | - | C2H1g23039 | CX1g006422 | - | Os01g0723800 | - | Detail |
| C1H1g24970 | 1:15,336,693-15,339,821 | + | C2H1g16913 | CX1g001239 | LOC_Os01g29740 | Os01g0392100 | - | Detail |
| C1H1g26975 | 1:15,365,201-15,365,632 | + | - | - | - | - | - | Detail |
| C1H1g26082 | 1:15,375,820-15,378,298 | + | - | - | - | - | - | Detail |
| C1H1g30437 | 1:15,411,396-15,413,377 | + | C2H1g26980 | CX1g003712 | LOC_Os01g01484 | Os01g0104600 | - | Detail |
| C1H1g30066 | 1:15,429,366-15,431,025 | + | - | - | - | - | - | Detail |
| C1H1g18319 | 1:15,433,282-15,434,374 | - | C2H1g14564 | CX1g001299 | LOC_Os01g29840 | Os01g0393100 | OsNAC26 | Detail |
| C1H1g03120 | 1:15,447,761-15,449,033 | + | C2H1g08075 | CX1g005245 | - | Os01g0393400 | - | Detail |
| C1H1g30621 | 1:15,803,611-15,806,298 | + | C2H1g23252 | CX1g001890 | LOC_Os01g31270 | Os01g0497400 | - | Detail |
| C1H1g21000 | 1:15,860,604-15,864,482 | + | C2H1g24761 | CX1g004953 | LOC_Os01g31220 | Os01g0496900 | - | Detail |
| C1H1g01185 | 1:16,043,587-16,050,249 | - | C2H1g09436 | CX1g005003 | LOC_Os01g31110 | Os01g0495900 | OsCAF1 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g040523 | 5:917,514-922,736 | + | - | C2H5g16207 | - | - | - | Detail |
| CX5g038722 | 5:928,055-929,982 | - | C1H5g19817 | C2H5g16202 | LOC_Os05g02870 | Os05g0120000 | - | Detail |
| CX5g040974 | 5:931,889-934,003 | - | C1H5g25594 | C2H5g27318 | LOC_Os05g02880 | Os05g0120100 | - | Detail |
| CX5g037156 | 5:936,843-938,942 | + | C1H5g19817 | C2H5g16202 | LOC_Os05g02890 | Os05g0120200 | - | Detail |
| CX5g041155 | 5:949,588-950,259 | + | - | - | LOC_Os05g02900 | Os05g0120300 | - | Detail |
| CX5g037865 | 5:967,315-971,968 | + | C1H5g31585 | C2H5g09848 | LOC_Os05g02940 | Os05g0120700 | - | Detail |
| CX5g036874 | 5:974,401-974,631 | - | - | - | - | - | - | Detail |
| CX5g040092 | 5:975,887-977,471 | + | C1H5g20255 | C2H5g03610 | LOC_Os05g02970 | Os05g0120800 | - | Detail |
| CX5g038539 | 5:981,504-982,379 | - | C1H5g10148 | C2H5g15789 | LOC_Os05g02980 | Os05g0120900 | - | Detail |
| CX5g038448 | 5:988,215-989,619 | + | C1H5g25679 | C2H5g24004 | LOC_Os05g02990 | Os05g0121000 | - | Detail |
| CX5g038251 | 5:998,051-1,001,269 | + | C1H5g01702 | C2H5g03745 | - | Os05g0121100 | - | Detail |
| CX5g038381 | 5:1,003,237-1,007,447 | - | C1H5g21915 | C2H5g13518 | LOC_Os05g03000 | Os05g0121200 | - | Detail |
| CX5g037956 | 5:1,008,739-1,013,675 | + | C1H5g23502 | C2H5g27724 | LOC_Os05g03020 | Os05g0121400 | - | Detail |
| CX5g038375 | 5:1,014,675-1,015,376 | - | C1H1g21238 | - | LOC_Os05g03030 | Os05g0121500 | - | Detail |
| CX5g038220 | 5:1,022,357-1,025,809 | - | C1H5g18884 | C2H5g29033 | LOC_Os05g03040 | Os05g0121600 | RSR1, OsTOE1, AP2/EREBP#090, AP2/EREBP90 | Detail |
| CX5g039403 | 5:1,030,505-1,030,669 | + | - | - | - | - | - | Detail |
| CX5g039140 | 5:1,042,559-1,042,717 | + | - | - | - | - | - | Detail |
| CX5g039481 | 5:1,056,023-1,060,794 | - | C1H5g22491 | C2H5g03539 | LOC_Os05g03050 | Os05g0121700 | - | Detail |
| CX5g038840 | 5:1,066,925-1,070,736 | + | C1H5g25689 | C2H5g07687 | LOC_Os05g03060 | Os05g0121800 | - | Detail |
| CX5g041093 | 5:1,071,490-1,072,860 | - | C1H5g18041 | C2H5g05750 | LOC_Os05g03070 | Os05g0121900 | - | Detail |