| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g11446 | 3:31,978,001-31,983,295 | + | C1H3g14322 | CX3g028534 | LOC_Os03g61890 | Os03g0835100 | - | Detail |
| C2H3g28021 | 3:31,989,557-31,992,407 | + | C1H3g03072 | CX3g026121 | LOC_Os03g61920 | Os03g0835400 | - | Detail |
| C2H3g05961 | 3:31,992,575-31,999,724 | - | C1H3g01425 | CX3g025800 | LOC_Os03g61930 | Os03g0835600 | - | Detail |
| C2H3g09738 | 3:32,001,534-32,007,999 | + | C1H3g11697 | CX3g026666 | LOC_Os03g61950 | Os03g0835800 | GPA3 | Detail |
| C2H3g22082 | 3:32,009,070-32,010,720 | + | C1H3g21220 | CX3g029438 | LOC_Os03g61960 | Os03g0835900 | - | Detail |
| C2H3g02537 | 3:32,012,174-32,015,962 | - | C1H3g16687 | CX3g027328 | LOC_Os03g61970 | Os03g0836000 | - | Detail |
| C2H3g21749 | 3:32,018,177-32,019,908 | + | C1H3g24245 | CX3g025105 | LOC_Os03g61980 | Os03g0602300 | OsBRD1, OsDWARF | Detail |
| C2H3g23676 | 3:32,020,217-32,028,395 | - | C1H3g15668 | CX3g029549 | - | - | - | Detail |
| C2H3g00553 | 3:32,032,293-32,033,259 | + | C1H3g24245 | CX3g025105 | LOC_Os03g61980 | Os03g0227700 | OsDWF4, OsDWARF4, CYP90B2 | Detail |
| C2H3g22451 | 3:32,033,408-32,036,698 | - | C1H3g15438 | CX3g025476 | LOC_Os03g61990 | Os03g0836200 | - | Detail |
| C2H3g24609 | 3:32,044,391-32,045,674 | - | C1H3g19672 | CX3g028617 | LOC_Os03g62030 | Os03g0836500 | - | Detail |
| C2H3g00356 | 3:32,055,203-32,057,725 | + | C1H3g28661 | CX3g026385 | LOC_Os03g62060 | Os03g0836800 | OsAH6 | Detail |
| C2H3g06920 | 3:32,059,473-32,063,273 | - | C1H3g07688 | CX3g028024 | LOC_Os03g62080 | Os03g0837000 | - | Detail |
| C2H3g14006 | 3:32,075,045-32,077,216 | + | C1H3g28661 | CX3g026385 | LOC_Os03g62060 | Os03g0836800 | OsAH6 | Detail |
| C2H3g05839 | 3:32,077,789-32,092,956 | - | C1H3g07688 | CX3g028024 | LOC_Os03g62080 | Os03g0837000 | - | Detail |
| C2H3g09641 | 3:32,096,528-32,102,341 | + | C1H3g22493 | CX3g029422 | LOC_Os03g62090 | Os03g0837100 | - | Detail |
| C2H3g16015 | 3:32,109,046-32,109,243 | + | C1H3g21977 | - | LOC_Os03g62110 | Os03g0837300 | OsNaPRT1, LTS1 | Detail |
| C2H3g09352 | 3:32,109,373-32,115,518 | + | C1H3g11581 | CX3g030206 | LOC_Os03g62110 | Os04g0429800 | - | Detail |
| C2H3g20340 | 3:32,128,103-32,130,514 | - | C1H3g11651 | CX3g026601 | LOC_Os03g62160 | Os03g0837800 | - | Detail |
| C2H3g14011 | 3:32,131,995-32,137,231 | + | C1H3g23631 | CX3g030122 | LOC_Os03g62170 | Os03g0837900 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g004840 | 1:21,578,546-21,579,367 | + | C1H1g31773 | C2H1g21798 | LOC_Os01g42320 | Os01g0598600 | - | Detail |
| CX1g000841 | 1:21,580,750-21,581,768 | - | - | - | - | Os01g0825800 | - | Detail |
| CX1g001820 | 1:21,583,509-21,591,843 | - | C1H1g13748 | C2H1g08894 | LOC_Os01g42350 | Os01g0609000 | - | Detail |
| CX1g001440 | 1:21,599,146-21,607,273 | - | C1H1g27835 | C2H1g05503 | LOC_Os01g42370 | Os01g0609200 | - | Detail |
| CX1g006062 | 1:21,609,088-21,615,666 | - | C1H1g11573 | C2H1g10771 | LOC_Os01g42380 | Os01g0609300 | - | Detail |
| CX1g006250 | 1:21,633,461-21,634,429 | - | C1H1g18561 | C2H1g14232 | LOC_Os01g42400 | Os01g0510100 | OsMKK6, OsMEK1 | Detail |
| CX1g006178 | 1:21,638,240-21,646,121 | - | C1H1g16733 | C2H1g00179 | LOC_Os01g42410 | Os01g0609900 | - | Detail |
| CX1g000446 | 1:21,658,496-21,661,278 | + | C1H1g07824 | C2H1g12978 | LOC_Os01g42430 | Os01g0610100 | - | Detail |
| CX1g000122 | 1:21,667,047-21,672,113 | + | C1H1g31299 | C2H1g15549 | LOC_Os01g42460 | Os01g0610300 | OsASI1, OsIBM2 | Detail |
| CX1g006881 | 1:21,674,404-21,674,559 | - | - | - | - | - | - | Detail |
| CX1g001787 | 1:21,675,663-21,678,345 | + | C1H1g17082 | C2H1g30233 | LOC_Os01g42470 | Os01g0610400 | - | Detail |
| CX1g003326 | 1:21,683,495-21,684,428 | + | C1H1g02981 | C2H6g28684 | LOC_Os11g03280 | Os11g0126500 | - | Detail |
| CX1g004113 | 1:21,686,590-21,689,286 | - | C1H1g00950 | C2H1g01156 | LOC_Os01g42480 | Os01g0610500 | - | Detail |
| CX1g006192 | 1:21,691,375-21,698,130 | - | C1H1g10040 | C2H1g27976 | LOC_Os01g42490 | Os01g0610600 | - | Detail |
| CX1g001957 | 1:21,699,343-21,701,653 | - | C1H1g07937 | C2H1g11351 | LOC_Os01g42500 | Os01g0610700 | - | Detail |
| CX1g002630 | 1:21,701,973-21,702,377 | + | - | - | - | - | - | Detail |
| CX1g001059 | 1:21,703,611-21,707,450 | - | C1H1g20514 | C2H1g18697 | LOC_Os01g42510 | Os01g0610800 | - | Detail |
| CX1g005818 | 1:21,727,257-21,727,784 | - | - | - | - | - | - | Detail |
| CX1g004638 | 1:21,749,434-21,749,631 | - | - | - | - | - | - | Detail |
| CX1g003691 | 1:21,753,784-21,756,218 | + | C1H1g18308 | C2H1g27995 | LOC_Os01g42520 | Os01g0611000 | - | Detail |