| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g30408 | 3:20,913,366-20,914,430 | - | C2H3g03313 | CX3g029922 | LOC_Os03g39850 | Os03g0595600 | - | Detail |
| C1H3g25743 | 3:20,917,777-20,921,508 | - | C2H3g11519 | CX3g026613 | LOC_Os03g39860 | Os03g0595800 | - | Detail |
| C1H3g12058 | 3:20,932,147-20,935,383 | - | C2H3g18490 | CX3g025071 | LOC_Os03g39910 | Os03g0596400 | - | Detail |
| C1H3g10947 | 3:20,938,976-20,947,409 | + | - | - | LOC_Os03g39880 | Os03g0596200 | - | Detail |
| C1H3g14608 | 3:20,951,288-20,952,150 | - | C2H3g19432 | CX3g028577 | LOC_Os03g40000 | Os03g0596800 | - | Detail |
| C1H3g14273 | 3:20,952,983-20,960,947 | - | C2H3g02583 | CX3g029325 | LOC_Os03g40010 | Os03g0596900 | - | Detail |
| C1H3g16422 | 3:20,978,602-20,980,830 | - | C2H3g09880 | CX3g030669 | LOC_Os03g40020 | Os03g0597200 | YSA | Detail |
| C1H3g01921 | 3:20,985,537-20,986,956 | - | C2H3g23840 | CX3g025021 | LOC_Os03g40040 | Os03g0597400 | - | Detail |
| C1H3g24981 | 3:20,988,575-20,989,100 | - | C2H3g26940 | - | - | - | - | Detail |
| C1H3g16396 | 3:20,992,754-20,994,723 | + | C2H3g01791 | CX3g029448 | LOC_Os03g40060 | Os03g0712600 | - | Detail |
| C1H3g07504 | 3:20,995,243-20,997,828 | - | C2H3g25378 | CX3g028607 | LOC_Os03g40070 | Os03g0597600 | - | Detail |
| C1H3g17059 | 3:21,003,651-21,004,909 | - | C2H3g15708 | CX3g026053 | - | - | - | Detail |
| C1H3g25847 | 3:21,022,858-21,025,802 | + | C2H3g07741 | CX3g025955 | LOC_Os03g40100 | Os03g0598100 | - | Detail |
| C1H3g09764 | 3:21,026,870-21,033,787 | - | C2H3g15953 | CX3g025103 | LOC_Os03g40110 | Os03g0598200 | - | Detail |
| C1H3g00363 | 3:21,040,916-21,042,476 | - | C2H3g29831 | CX3g025618 | LOC_Os03g40130 | - | - | Detail |
| C1H3g19636 | 3:21,096,738-21,098,755 | + | C2H3g27050 | CX3g030408 | LOC_Os03g40170 | Os03g0598700 | - | Detail |
| C1H3g15380 | 3:21,100,719-21,102,111 | - | C2H3g27393 | CX3g029644 | LOC_Os03g40180 | Os03g0598800 | - | Detail |
| C1H3g11506 | 3:21,105,214-21,107,585 | - | C2H3g12187 | CX3g030402 | - | Os03g0598900 | - | Detail |
| C1H3g13942 | 3:21,118,422-21,124,239 | - | C2H3g00333 | CX3g029245 | LOC_Os03g40194 | Os03g0599000 | - | Detail |
| C1H3g19744 | 3:21,148,635-21,150,370 | - | C2H3g25565 | CX3g028997 | LOC_Os03g40250 | Os03g0599400 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX4g035113 | 4:30,100,707-30,104,388 | + | C1H4g28533 | C2H4g17181 | LOC_Os04g58600 | Os04g0682500 | - | Detail |
| CX4g034300 | 4:30,108,573-30,116,773 | - | C1H4g29653 | C2H4g03946 | LOC_Os04g58620 | Os04g0682800 | - | Detail |
| CX4g036068 | 4:30,118,203-30,125,400 | - | C1H4g29653 | C2H4g03946 | LOC_Os04g58630 | Os04g0682900 | OsMSH3 | Detail |
| CX4g036644 | 4:30,126,152-30,129,492 | - | C1H4g01136 | C2H4g28695 | LOC_Os04g58640 | Os04g0683100 | - | Detail |
| CX4g035462 | 4:30,137,831-30,138,142 | + | - | - | - | - | - | Detail |
| CX4g033383 | 4:30,138,983-30,141,655 | + | C1H4g02161 | C2H4g18113 | LOC_Os04g58690 | Os04g0683500 | - | Detail |
| CX4g035511 | 4:30,149,227-30,154,271 | + | C1H4g12491 | C2H4g00628 | LOC_Os04g58700 | Os04g0683600 | - | Detail |
| CX4g034879 | 4:30,156,260-30,157,902 | - | C1H4g05282 | C2H4g20996 | LOC_Os04g58710 | Os04g0683700 | OsAAE3 | Detail |
| CX4g033496 | 4:30,162,771-30,168,139 | + | C1H4g17079 | C2H4g00697 | LOC_Os04g58720 | Os04g0683800 | OsFTIP6 | Detail |
| CX4g032610 | 4:30,168,536-30,170,657 | - | C1H4g07968 | C2H4g01840 | LOC_Os04g58730 | Os04g0683900 | - | Detail |
| CX4g032783 | 4:30,175,244-30,175,414 | - | - | - | LOC_Os04g58734 | Os04g0684100 | - | Detail |
| CX4g031746 | 4:30,176,885-30,177,274 | - | - | - | - | - | - | Detail |
| CX4g033459 | 4:30,187,458-30,193,121 | + | C1H4g20128 | C2H4g26858 | LOC_Os04g58750 | Os04g0684200 | OsBSK3 | Detail |
| CX4g035706 | 4:30,193,552-30,193,992 | - | - | - | - | - | - | Detail |
| CX4g033405 | 4:30,194,994-30,195,847 | + | C1H4g02282 | C2H4g01802 | LOC_Os04g58760 | Os04g0684300 | OsCASP1 | Detail |
| CX4g031834 | 4:30,199,007-30,206,430 | + | C1H4g18219 | C2H4g02516 | LOC_Os04g58780 | Os04g0684500 | - | Detail |
| CX4g033329 | 4:30,210,632-30,210,877 | + | - | C2H4g13202 | LOC_Os04g58790 | Os04g0684600 | - | Detail |
| CX4g033643 | 4:30,214,071-30,215,633 | + | C1H4g26669 | C2H4g22761 | LOC_Os04g58800 | Os04g0684800 | - | Detail |
| CX4g036097 | 4:30,217,818-30,217,973 | + | - | - | - | - | - | Detail |
| CX4g034684 | 4:30,218,996-30,219,898 | + | - | C2H4g01080 | LOC_Os04g58810 | Os04g0684900 | OsCAF1B, OsCAF1B(L), OsCAF1-5 | Detail |