| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g13692 | 3:6,667,446-6,668,126 | - | C2H3g07962 | CX3g030665 | LOC_Os03g13870 | Os03g0242300 | - | Detail |
| C1H3g29006 | 3:6,675,963-6,676,322 | + | C2H3g22214 | CX3g028489 | - | - | - | Detail |
| C1H3g00814 | 3:6,680,713-6,683,061 | - | C2H3g07310 | CX3g028277 | LOC_Os03g13930 | Os03g0242900 | - | Detail |
| C1H3g19058 | 3:6,686,888-6,689,587 | - | C2H3g16149 | CX3g027562 | LOC_Os03g13950 | Os03g0243100 | - | Detail |
| C1H3g13143 | 3:6,694,354-6,698,831 | - | C2H3g16858 | CX3g026057 | LOC_Os03g13960 | Os03g0243200 | - | Detail |
| C1H3g26726 | 3:6,701,454-6,705,737 | - | C2H3g16858 | CX3g026485 | LOC_Os03g13970 | Os03g0243300 | OsRpn10, OsvWA9 | Detail |
| C1H3g06194 | 3:6,715,265-6,720,744 | + | C2H3g01768 | CX3g026209 | LOC_Os03g14000 | Os03g0243600 | OsACBP5 | Detail |
| C1H3g04646 | 3:6,723,062-6,726,338 | + | C2H3g11388 | CX3g028457 | LOC_Os03g14010 | Os03g0243700 | - | Detail |
| C1H3g06812 | 3:6,726,489-6,731,922 | + | C2H3g14947 | - | LOC_Os03g14020 | Os03g0243800 | - | Detail |
| C1H3g17833 | 3:6,734,748-6,737,412 | - | C2H3g18377 | CX3g024990 | LOC_Os03g14030 | Os03g0243900 | - | Detail |
| C1H3g18451 | 3:6,739,807-6,741,874 | + | C2H3g07558 | CX3g029567 | LOC_Os03g14040 | Os03g0244000 | - | Detail |
| C1H3g18445 | 3:6,749,697-6,753,762 | + | C2H3g02531 | CX3g030186 | LOC_Os03g14050 | Os03g0244200 | - | Detail |
| C1H3g01802 | 3:6,764,514-6,768,416 | + | C2H3g30391 | CX3g029577 | LOC_Os03g14080 | Os03g0244600 | - | Detail |
| C1H3g17574 | 3:6,774,248-6,776,191 | - | C2H3g04380 | CX3g025151 | LOC_Os03g14090 | Os03g0244700 | - | Detail |
| C1H3g19459 | 3:6,784,413-6,784,904 | - | C2H3g24294 | CX3g030165 | LOC_Os03g20730 | Os03g0244950 | - | Detail |
| C1H3g03763 | 3:6,786,407-6,789,583 | + | C2H3g18030 | CX3g027701 | LOC_Os03g14120 | Os03g0245100 | - | Detail |
| C1H3g06553 | 3:6,790,439-6,791,841 | - | C2H3g03452 | CX3g026036 | LOC_Os03g14130 | Os03g0245200 | - | Detail |
| C1H3g27152 | 3:6,794,210-6,795,381 | - | C2H3g01214 | CX3g027348 | LOC_Os03g14140 | Os03g0245300 | - | Detail |
| C1H3g23422 | 3:6,797,036-6,797,980 | - | C2H3g21217 | CX3g029867 | LOC_Os03g14150 | Os03g0245500 | GAPLESS2 | Detail |
| C1H3g12594 | 3:6,802,446-6,804,044 | - | C2H3g18121 | CX3g028205 | LOC_Os03g14170 | Os03g0245700 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX4g035113 | 4:30,100,707-30,104,388 | + | C1H4g28533 | C2H4g17181 | LOC_Os04g58600 | Os04g0682500 | - | Detail |
| CX4g034300 | 4:30,108,573-30,116,773 | - | C1H4g29653 | C2H4g03946 | LOC_Os04g58620 | Os04g0682800 | - | Detail |
| CX4g036068 | 4:30,118,203-30,125,400 | - | C1H4g29653 | C2H4g03946 | LOC_Os04g58630 | Os04g0682900 | OsMSH3 | Detail |
| CX4g036644 | 4:30,126,152-30,129,492 | - | C1H4g01136 | C2H4g28695 | LOC_Os04g58640 | Os04g0683100 | - | Detail |
| CX4g035462 | 4:30,137,831-30,138,142 | + | - | - | - | - | - | Detail |
| CX4g033383 | 4:30,138,983-30,141,655 | + | C1H4g02161 | C2H4g18113 | LOC_Os04g58690 | Os04g0683500 | - | Detail |
| CX4g035511 | 4:30,149,227-30,154,271 | + | C1H4g12491 | C2H4g00628 | LOC_Os04g58700 | Os04g0683600 | - | Detail |
| CX4g034879 | 4:30,156,260-30,157,902 | - | C1H4g05282 | C2H4g20996 | LOC_Os04g58710 | Os04g0683700 | OsAAE3 | Detail |
| CX4g033496 | 4:30,162,771-30,168,139 | + | C1H4g17079 | C2H4g00697 | LOC_Os04g58720 | Os04g0683800 | OsFTIP6 | Detail |
| CX4g032610 | 4:30,168,536-30,170,657 | - | C1H4g07968 | C2H4g01840 | LOC_Os04g58730 | Os04g0683900 | - | Detail |
| CX4g032783 | 4:30,175,244-30,175,414 | - | - | - | LOC_Os04g58734 | Os04g0684100 | - | Detail |
| CX4g031746 | 4:30,176,885-30,177,274 | - | - | - | - | - | - | Detail |
| CX4g033459 | 4:30,187,458-30,193,121 | + | C1H4g20128 | C2H4g26858 | LOC_Os04g58750 | Os04g0684200 | OsBSK3 | Detail |
| CX4g035706 | 4:30,193,552-30,193,992 | - | - | - | - | - | - | Detail |
| CX4g033405 | 4:30,194,994-30,195,847 | + | C1H4g02282 | C2H4g01802 | LOC_Os04g58760 | Os04g0684300 | OsCASP1 | Detail |
| CX4g031834 | 4:30,199,007-30,206,430 | + | C1H4g18219 | C2H4g02516 | LOC_Os04g58780 | Os04g0684500 | - | Detail |
| CX4g033329 | 4:30,210,632-30,210,877 | + | - | C2H4g13202 | LOC_Os04g58790 | Os04g0684600 | - | Detail |
| CX4g033643 | 4:30,214,071-30,215,633 | + | C1H4g26669 | C2H4g22761 | LOC_Os04g58800 | Os04g0684800 | - | Detail |
| CX4g036097 | 4:30,217,818-30,217,973 | + | - | - | - | - | - | Detail |
| CX4g034684 | 4:30,218,996-30,219,898 | + | - | C2H4g01080 | LOC_Os04g58810 | Os04g0684900 | OsCAF1B, OsCAF1B(L), OsCAF1-5 | Detail |