| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H2g18815 | 2:22,964,531-22,973,156 | - | C1H2g02429 | CX2g019377 | LOC_Os02g40460 | Os02g0617700 | - | Detail |
| C2H2g29974 | 2:22,984,697-22,984,957 | - | - | - | - | - | - | Detail |
| C2H2g26929 | 2:22,988,593-22,990,462 | + | C1H2g22582 | - | LOC_Os02g40490 | - | - | Detail |
| C2H2g04756 | 2:22,994,675-22,996,352 | + | C1H2g02238 | CX2g024840 | LOC_Os02g40500 | Os02g0618100 | OsGRX9, OsGrx_C2.1 | Detail |
| C2H2g05107 | 2:22,997,619-23,000,421 | + | C1H2g04978 | CX2g024264 | LOC_Os02g40510 | Os02g0618200 | OsPRR1, OsTOC1, OsPRR1/OsTOC1 | Detail |
| C2H2g25708 | 2:23,002,033-23,003,523 | - | C1H2g16546 | - | LOC_Os02g40514 | Os02g0618250 | - | Detail |
| C2H2g01262 | 2:23,008,365-23,009,939 | - | C1H2g01139 | CX2g019264 | LOC_Os02g40530 | Os02g0618400 | OsMPS | Detail |
| C2H2g01838 | 2:23,025,294-23,026,795 | + | C1H2g19268 | CX2g024894 | LOC_Os02g40550 | Os02g0618700 | - | Detail |
| C2H2g30582 | 2:23,043,425-23,044,159 | - | - | - | LOC_Os02g40600 | - | - | Detail |
| C2H2g02169 | 2:23,070,406-23,075,582 | - | C1H2g16057 | CX2g023988 | LOC_Os02g40664 | Os02g0619600 | - | Detail |
| C2H2g26987 | 2:23,075,966-23,077,800 | + | C1H2g04094 | - | - | - | - | Detail |
| C2H2g19869 | 2:23,080,364-23,080,630 | - | - | - | - | - | - | Detail |
| C2H2g18142 | 2:23,088,767-23,092,303 | + | C1H2g31349 | CX2g019895 | LOC_Os02g40680 | Os02g0620100 | - | Detail |
| C2H2g10513 | 2:23,093,099-23,093,482 | + | C1H2g31349 | CX2g020219 | LOC_Os02g40690 | Os02g0620200 | - | Detail |
| C2H2g22522 | 2:23,099,083-23,099,503 | + | C1H2g24265 | CX2g023588 | LOC_Os02g40700 | Os02g0620400 | - | Detail |
| C2H2g07540 | 2:23,105,722-23,107,218 | + | C1H2g23096 | CX2g024155 | LOC_Os02g40710 | Os02g0620500 | OsAMT1;3 | Detail |
| C2H2g29061 | 2:23,111,389-23,115,393 | + | C1H2g17359 | CX2g024932 | LOC_Os02g40730 | Os02g0620600 | AMT1;2, OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1, 3", OsAMT1;3, OsAMT1.3, OsAMT1.2 | Detail |
| C2H2g23641 | 2:23,118,462-23,120,057 | - | C1H2g17305 | CX2g024918 | LOC_Os02g40750 | Os02g0769900 | - | Detail |
| C2H2g07915 | 2:23,128,520-23,133,173 | - | - | - | - | - | - | Detail |
| C2H2g25432 | 2:23,136,851-23,144,033 | + | C1H2g09682 | CX2g022252 | LOC_Os02g40770 | Os02g0621100 | SDG712 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX4g035618 | 4:29,439,231-29,441,671 | - | C1H4g11017 | C2H4g10649 | LOC_Os04g57320 | Os04g0668900 | IM1, OsIM1, OsIM1a, OsIM2, OsIM, PTOX1 | Detail |
| CX4g035266 | 4:29,443,952-29,445,514 | - | C1H4g09478 | C2H4g23402 | LOC_Os04g57330 | Os04g0669100 | - | Detail |
| CX4g032933 | 4:29,448,262-29,448,819 | - | C1H4g01273 | C2H4g26783 | LOC_Os04g57340 | Os04g0669200 | - | Detail |
| CX4g033726 | 4:29,451,769-29,455,324 | + | C1H4g10679 | C2H4g26457 | LOC_Os04g57350 | Os04g0669300 | - | Detail |
| CX4g032922 | 4:29,456,194-29,456,981 | + | - | C2H4g10159 | LOC_Os04g57360 | Os04g0669475 | - | Detail |
| CX4g034719 | 4:29,462,352-29,464,706 | - | C1H4g10307 | C2H4g05368 | LOC_Os04g57370 | Os04g0669500 | - | Detail |
| CX4g032862 | 4:29,465,085-29,466,604 | - | C1H4g20800 | C2H4g28278 | LOC_Os04g57380 | Os04g0669600 | - | Detail |
| CX4g032503 | 4:29,467,780-29,470,479 | - | C1H4g20558 | C2H4g09192 | LOC_Os04g57400 | Os04g0669800 | - | Detail |
| CX4g034572 | 4:29,473,470-29,476,106 | - | C1H4g00350 | C2H4g18679 | LOC_Os04g57410 | Os04g0669900 | - | Detail |
| CX4g034090 | 4:29,478,717-29,480,476 | + | C1H4g00962 | C2H4g24032 | LOC_Os04g57420 | Os04g0670000 | - | Detail |
| CX4g032241 | 4:29,483,660-29,484,865 | - | - | - | - | Os04g0670150 | - | Detail |
| CX4g033521 | 4:29,485,661-29,488,731 | - | C1H4g27420 | C2H4g02826 | LOC_Os04g57440 | Os04g0670200 | - | Detail |
| CX4g031684 | 4:29,493,929-29,497,592 | - | C1H4g13887 | C2H4g28360 | LOC_Os04g57480 | Os04g0670400 | - | Detail |
| CX4g032812 | 4:29,498,161-29,499,851 | + | C1H4g28653 | C2H4g01861 | LOC_Os04g57490 | Os04g0670500 | OsCP1 | Detail |
| CX4g032203 | 4:29,502,326-29,503,995 | + | C1H4g15123 | C2H4g11996 | LOC_Os04g57500 | Os04g0670700 | - | Detail |
| CX4g036015 | 4:29,504,440-29,507,117 | - | C1H4g12548 | C2H4g00725 | LOC_Os04g57510 | Os04g0670600 | - | Detail |
| CX4g033656 | 4:29,511,421-29,517,795 | + | C1H4g28067 | C2H4g29038 | LOC_Os04g57520 | Os04g0670800 | - | Detail |
| CX4g035876 | 4:29,530,817-29,533,008 | - | C1H4g24932 | C2H4g16367 | LOC_Os04g57530 | Os04g0670900 | SH4, sh4, SH3, SH3/SH4 | Detail |
| CX4g035340 | 4:29,537,172-29,539,240 | - | C1H4g07972 | C2H4g09789 | LOC_Os04g57540 | Os04g0671100 | - | Detail |
| CX4g036253 | 4:29,540,434-29,543,048 | - | C1H4g22743 | C2H4g30313 | LOC_Os04g57550 | Os04g0671200 | - | Detail |