| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g01632 | 5:11,052,405-11,059,345 | - | C2H5g01064 | CX5g037017 | LOC_Os05g23924 | Os05g0304900 | - | Detail |
| C1H5g22159 | 5:11,092,617-11,101,298 | + | C2H5g30014 | CX5g038283 | LOC_Os05g23940 | Os05g0305100 | - | Detail |
| C1H5g18033 | 5:11,096,813-11,097,145 | - | - | - | - | Os05g0305150 | - | Detail |
| C1H5g00006 | 5:11,103,177-11,104,351 | + | C2H4g05575 | CX5g038919 | LOC_Os05g23950 | Os05g0305200 | - | Detail |
| C1H5g19296 | 5:11,111,425-11,123,681 | - | C2H5g08357 | CX5g040364 | LOC_Os05g23960 | Os05g0305300 | - | Detail |
| C1H5g16715 | 5:11,165,384-11,171,488 | - | C2H5g07432 | CX5g037290 | LOC_Os05g24000 | Os05g0305700 | - | Detail |
| C1H5g25266 | 5:11,185,297-11,191,137 | + | C2H5g21577 | CX5g040201 | LOC_Os05g24010 | Os05g0305900 | - | Detail |
| C1H5g23435 | 5:11,191,775-11,200,386 | - | C2H5g20371 | CX5g037665 | LOC_Os05g24020 | Os05g0306000 | - | Detail |
| C1H5g22935 | 5:11,234,340-11,243,823 | + | C2H5g05702 | CX5g037031 | LOC_Os05g24140 | Os05g0307100 | - | Detail |
| C1H5g07106 | 5:11,245,409-11,247,451 | - | C2H5g28956 | CX5g037443 | LOC_Os05g24150 | Os05g0307200 | - | Detail |
| C1H5g26016 | 5:11,266,439-11,272,657 | - | C2H5g01593 | CX5g040600 | LOC_Os05g24160 | Os05g0307400 | OsDRB1-1 | Detail |
| C1H5g02736 | 5:11,368,677-11,372,875 | + | C2H5g00614 | CX5g037332 | LOC_Os05g24550 | Os05g0310500 | - | Detail |
| C1H5g04494 | 5:11,373,364-11,375,193 | - | C2H5g17111 | CX5g037484 | LOC_Os05g24560 | Os05g0310600 | - | Detail |
| C1H5g26249 | 5:11,380,219-11,390,049 | + | C2H5g23044 | CX5g040547 | LOC_Os05g24580 | Os05g0310750 | - | Detail |
| C1H5g13473 | 5:11,392,994-11,397,834 | + | C2H5g15821 | CX5g037996 | LOC_Os05g24601 | Os05g0310800 | - | Detail |
| C1H5g24769 | 5:11,402,978-11,408,180 | + | C2H5g25624 | CX5g037996 | LOC_Os05g24601 | Os05g0311000 | - | Detail |
| C1H5g28483 | 5:11,437,171-11,437,934 | + | C2H5g00350 | CX5g037701 | LOC_Os05g24650 | Os05g0311500 | - | Detail |
| C1H5g19973 | 5:11,472,540-11,485,744 | - | C2H5g01545 | CX5g040887 | LOC_Os05g24684 | Os05g0312000 | SPL40 | Detail |
| C1H5g11619 | 5:11,513,946-11,516,487 | - | C2H5g12302 | CX5g037289 | LOC_Os05g24770 | Os05g0312500 | - | Detail |
| C1H5g25693 | 5:11,534,828-11,540,882 | + | C2H5g00579 | CX5g039271 | LOC_Os05g24880 | Os05g0313500 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX4g035527 | 4:29,072,526-29,080,033 | - | C1H4g05764 | C2H4g30358 | LOC_Os04g56630 | Os04g0661700 | - | Detail |
| CX4g036335 | 4:29,081,648-29,082,831 | - | C1H4g15510 | C2H4g15418 | LOC_Os04g56640 | Os04g0661800 | - | Detail |
| CX4g035742 | 4:29,084,637-29,087,798 | + | C1H4g17837 | C2H4g25643 | LOC_Os04g56646 | Os04g0661900 | - | Detail |
| CX4g035185 | 4:29,089,251-29,090,372 | + | C1H4g07157 | C2H4g06604 | LOC_Os04g56654 | - | - | Detail |
| CX4g035521 | 4:29,091,153-29,092,913 | - | C1H4g06952 | C2H4g27865 | LOC_Os04g56670 | Os04g0662100 | - | Detail |
| CX4g033481 | 4:29,096,690-29,097,127 | - | - | C2H4g20023 | LOC_Os04g56680 | Os04g0662200 | - | Detail |
| CX4g032981 | 4:29,110,880-29,111,347 | - | - | C2H4g12369 | LOC_Os04g56690 | Os04g0662400 | - | Detail |
| CX4g032334 | 4:29,112,603-29,112,755 | + | - | - | - | Os01g0728000 | - | Detail |
| CX4g032460 | 4:29,115,919-29,119,044 | - | C1H4g20842 | C2H4g27508 | LOC_Os04g56700 | Os04g0662600 | F3H | Detail |
| CX4g034138 | 4:29,120,821-29,124,698 | - | C1H4g09059 | C2H4g17303 | LOC_Os04g56710 | Os04g0662700 | - | Detail |
| CX4g034339 | 4:29,127,077-29,132,897 | + | C1H4g13098 | C2H4g16716 | LOC_Os04g56720 | Os04g0662800 | - | Detail |
| CX4g033445 | 4:29,133,803-29,135,764 | - | C1H4g29894 | C2H4g14267 | LOC_Os04g56730 | Os04g0662900 | - | Detail |
| CX4g032392 | 4:29,149,047-29,149,211 | - | - | - | - | - | - | Detail |
| CX4g032535 | 4:29,152,755-29,157,470 | + | C1H4g08308 | C2H4g26679 | LOC_Os04g56740 | Os04g0663100 | - | Detail |
| CX4g033028 | 4:29,162,158-29,167,120 | - | C1H4g00285 | C2H4g19453 | LOC_Os04g56750 | Os04g0663200 | - | Detail |
| CX4g031937 | 4:29,168,442-29,168,774 | - | C1H5g05278 | C2H4g17808 | LOC_Os04g56760 | Os04g0663300 | OsPHF5A1 | Detail |
| CX4g034501 | 4:29,170,056-29,170,310 | + | C1H4g10605 | C2H4g23478 | - | - | - | Detail |
| CX4g032009 | 4:29,170,361-29,172,471 | + | C1H4g18316 | C2H4g29870 | LOC_Os04g56770 | Os04g0663500 | - | Detail |
| CX4g035961 | 4:29,174,580-29,175,652 | - | C1H4g08413 | C2H4g27682 | LOC_Os04g56780 | Os04g0663600 | WOX1, Os WUS, WUS, OsWOX1, OsWUS, TAB1, TAB1/WUS, MOC3, MOC3/OsWUS | Detail |
| CX4g034853 | 4:29,183,936-29,187,241 | - | C1H4g06808 | C2H4g25028 | LOC_Os04g56790 | Os04g0663700 | - | Detail |