| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g01530 | 3:14,444,312-14,445,487 | + | C2H3g19865 | CX3g027578 | LOC_Os03g27850 | Os03g0396000 | - | Detail |
| C1H3g07168 | 3:14,451,295-14,451,994 | + | C2H3g17239 | - | - | - | - | Detail |
| C1H3g18668 | 3:14,452,462-14,453,909 | + | C2H3g28385 | - | - | Os03g0396100 | - | Detail |
| C1H3g24344 | 3:14,459,205-14,459,901 | - | C2H3g02671 | CX3g030978 | LOC_Os03g27900 | Os03g0396500 | - | Detail |
| C1H3g22022 | 3:14,473,205-14,479,283 | + | C2H3g12892 | CX3g028903 | LOC_Os03g27930 | Os03g0396900 | - | Detail |
| C1H3g00858 | 3:14,482,131-14,482,709 | + | C2H3g11199 | CX3g026417 | - | - | - | Detail |
| C1H3g12738 | 3:14,483,259-14,495,166 | + | C2H3g14980 | CX3g031110 | LOC_Os03g27950 | Os03g0397300 | - | Detail |
| C1H3g05691 | 3:14,498,061-14,502,255 | + | C2H3g24749 | CX3g027792 | LOC_Os03g27960 | Os03g0397400 | OsCAX2 | Detail |
| C1H3g31188 | 3:14,503,074-14,504,792 | + | C2H3g02059 | CX3g028698 | LOC_Os03g27970 | Os03g0397500 | - | Detail |
| C1H3g30234 | 3:14,509,783-14,515,738 | - | C2H3g25412 | CX3g027940 | LOC_Os03g27990 | Os03g0397700 | - | Detail |
| C1H3g01123 | 3:14,570,899-14,573,149 | + | C2H3g06314 | CX3g029927 | LOC_Os03g28090 | Os03g0399000 | - | Detail |
| C1H3g19188 | 3:14,591,103-14,595,918 | + | C2H3g28474 | - | - | - | - | Detail |
| C1H3g20083 | 3:14,597,168-14,608,553 | - | C2H3g10150 | CX3g030514 | LOC_Os03g28140 | Os03g0399532 | - | Detail |
| C1H3g15734 | 3:14,615,937-14,616,850 | + | C2H3g20990 | CX3g029800 | LOC_Os03g28160 | Os03g0399800 | - | Detail |
| C1H3g27218 | 3:14,621,391-14,622,259 | + | C2H3g13601 | CX3g028937 | LOC_Os03g28170 | Os03g0399800 | - | Detail |
| C1H3g12790 | 3:14,655,054-14,655,296 | - | C2H3g09978 | CX3g029785 | LOC_Os03g28260 | Os03g0400700 | - | Detail |
| C1H3g07265 | 3:14,675,462-14,676,240 | - | C2H3g24120 | CX3g027787 | LOC_Os03g28270 | Os03g0400901 | - | Detail |
| C1H3g22351 | 3:14,676,906-14,677,370 | - | - | CX3g027787 | LOC_Os03g28270 | Os03g0400901 | - | Detail |
| C1H3g05517 | 3:14,687,321-14,689,692 | - | C2H3g04104 | CX3g028044 | LOC_Os03g28270 | Os03g0400800 | - | Detail |
| C1H3g03799 | 3:14,699,985-14,700,722 | + | - | CX3g029462 | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX4g035527 | 4:29,072,526-29,080,033 | - | C1H4g05764 | C2H4g30358 | LOC_Os04g56630 | Os04g0661700 | - | Detail |
| CX4g036335 | 4:29,081,648-29,082,831 | - | C1H4g15510 | C2H4g15418 | LOC_Os04g56640 | Os04g0661800 | - | Detail |
| CX4g035742 | 4:29,084,637-29,087,798 | + | C1H4g17837 | C2H4g25643 | LOC_Os04g56646 | Os04g0661900 | - | Detail |
| CX4g035185 | 4:29,089,251-29,090,372 | + | C1H4g07157 | C2H4g06604 | LOC_Os04g56654 | - | - | Detail |
| CX4g035521 | 4:29,091,153-29,092,913 | - | C1H4g06952 | C2H4g27865 | LOC_Os04g56670 | Os04g0662100 | - | Detail |
| CX4g033481 | 4:29,096,690-29,097,127 | - | - | C2H4g20023 | LOC_Os04g56680 | Os04g0662200 | - | Detail |
| CX4g032981 | 4:29,110,880-29,111,347 | - | - | C2H4g12369 | LOC_Os04g56690 | Os04g0662400 | - | Detail |
| CX4g032334 | 4:29,112,603-29,112,755 | + | - | - | - | Os01g0728000 | - | Detail |
| CX4g032460 | 4:29,115,919-29,119,044 | - | C1H4g20842 | C2H4g27508 | LOC_Os04g56700 | Os04g0662600 | F3H | Detail |
| CX4g034138 | 4:29,120,821-29,124,698 | - | C1H4g09059 | C2H4g17303 | LOC_Os04g56710 | Os04g0662700 | - | Detail |
| CX4g034339 | 4:29,127,077-29,132,897 | + | C1H4g13098 | C2H4g16716 | LOC_Os04g56720 | Os04g0662800 | - | Detail |
| CX4g033445 | 4:29,133,803-29,135,764 | - | C1H4g29894 | C2H4g14267 | LOC_Os04g56730 | Os04g0662900 | - | Detail |
| CX4g032392 | 4:29,149,047-29,149,211 | - | - | - | - | - | - | Detail |
| CX4g032535 | 4:29,152,755-29,157,470 | + | C1H4g08308 | C2H4g26679 | LOC_Os04g56740 | Os04g0663100 | - | Detail |
| CX4g033028 | 4:29,162,158-29,167,120 | - | C1H4g00285 | C2H4g19453 | LOC_Os04g56750 | Os04g0663200 | - | Detail |
| CX4g031937 | 4:29,168,442-29,168,774 | - | C1H5g05278 | C2H4g17808 | LOC_Os04g56760 | Os04g0663300 | OsPHF5A1 | Detail |
| CX4g034501 | 4:29,170,056-29,170,310 | + | C1H4g10605 | C2H4g23478 | - | - | - | Detail |
| CX4g032009 | 4:29,170,361-29,172,471 | + | C1H4g18316 | C2H4g29870 | LOC_Os04g56770 | Os04g0663500 | - | Detail |
| CX4g035961 | 4:29,174,580-29,175,652 | - | C1H4g08413 | C2H4g27682 | LOC_Os04g56780 | Os04g0663600 | WOX1, Os WUS, WUS, OsWOX1, OsWUS, TAB1, TAB1/WUS, MOC3, MOC3/OsWUS | Detail |
| CX4g034853 | 4:29,183,936-29,187,241 | - | C1H4g06808 | C2H4g25028 | LOC_Os04g56790 | Os04g0663700 | - | Detail |