| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g28511 | 3:29,678,395-29,684,235 | + | C2H3g01139 | CX3g026186 | LOC_Os03g55760 | Os03g0766500 | - | Detail |
| C1H3g11551 | 3:29,687,040-29,690,346 | + | C2H3g02791 | CX3g026597 | LOC_Os03g55784 | Os03g0766900 | - | Detail |
| C1H3g16165 | 3:29,702,028-29,705,343 | - | C2H3g02036 | CX3g026749 | LOC_Os03g55820 | Os03g0767500 | - | Detail |
| C1H3g20103 | 3:29,709,048-29,710,559 | + | C2H3g17261 | - | LOC_Os03g55830 | Os03g0767600 | - | Detail |
| C1H3g10730 | 3:29,710,969-29,712,911 | + | C2H3g25481 | CX3g027804 | LOC_Os03g55830 | Os03g0767600 | - | Detail |
| C1H3g31861 | 3:29,715,687-29,718,113 | + | C2H3g21501 | CX3g028593 | LOC_Os03g55850 | Os03g0767800 | - | Detail |
| C1H3g14127 | 3:29,719,059-29,719,939 | + | C2H3g01498 | CX3g024946 | LOC_Os03g55870 | Os03g0767900 | - | Detail |
| C1H3g26336 | 3:29,727,918-29,732,100 | - | C2H3g08266 | CX3g028693 | LOC_Os03g55890 | Os03g0769000 | - | Detail |
| C1H3g24628 | 3:29,739,501-29,744,230 | - | C2H3g19989 | CX3g027389 | LOC_Os03g55920 | Os03g0769050 | - | Detail |
| C1H3g25789 | 3:29,745,160-29,746,665 | - | C2H3g27533 | CX3g028168 | LOC_Os03g55930 | Os03g0769100 | - | Detail |
| C1H3g19145 | 3:29,754,537-29,758,327 | + | C2H3g12948 | CX3g028504 | LOC_Os03g55950 | Os03g0769400 | - | Detail |
| C1H3g25186 | 3:29,761,091-29,763,906 | - | C2H3g22257 | CX3g028565 | LOC_Os03g55970 | Os03g0769600 | - | Detail |
| C1H3g09664 | 3:29,781,351-29,781,905 | + | C2H3g01939 | CX3g028075 | LOC_Os03g56010 | Os03g0770000 | - | Detail |
| C1H3g00630 | 3:29,783,961-29,784,704 | + | - | - | - | - | - | Detail |
| C1H3g17718 | 3:29,792,098-29,793,860 | + | C2H3g30222 | CX3g030368 | LOC_Os03g56020 | Os03g0770100 | - | Detail |
| C1H3g16948 | 3:29,820,097-29,824,011 | + | C2H3g30157 | CX3g030242 | LOC_Os03g56050 | Os03g0770700 | - | Detail |
| C1H3g26645 | 3:29,826,799-29,830,856 | - | C2H3g09554 | CX3g030133 | LOC_Os03g56060 | Os03g0770800 | OsCSLC9 | Detail |
| C1H3g03394 | 3:29,839,102-29,841,454 | - | C2H3g10825 | CX3g029202 | LOC_Os03g56070 | Os03g0770900 | - | Detail |
| C1H3g11674 | 3:29,853,307-29,854,565 | - | C2H3g08836 | CX3g029828 | LOC_Os03g56090 | Os03g0771100 | OsMYB36c | Detail |
| C1H3g05785 | 3:29,865,263-29,870,473 | + | C2H3g08036 | CX3g025561 | LOC_Os03g56110 | Os03g0771500 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX4g034733 | 4:28,609,994-28,615,991 | + | C1H4g21279 | C2H4g13053 | LOC_Os04g55840 | Os04g0652600 | - | Detail |
| CX4g032019 | 4:28,617,897-28,618,299 | + | C1H4g27223 | C2H4g17182 | LOC_Os04g55850 | Os04g0652700 | - | Detail |
| CX4g034882 | 4:28,619,289-28,620,161 | + | C1H4g01148 | C2H4g24107 | LOC_Os04g55850 | Os04g0652700 | - | Detail |
| CX4g035227 | 4:28,621,814-28,623,947 | - | C1H4g09382 | C2H4g15013 | LOC_Os04g55860 | Os04g0652900 | - | Detail |
| CX4g035735 | 4:28,639,876-28,640,041 | - | - | - | - | - | - | Detail |
| CX4g034020 | 4:28,641,646-28,644,969 | + | C1H4g27108 | C2H4g11780 | LOC_Os04g55920 | Os04g0653000 | EG2, OsTIFY3, OsJAZ10, OsJAZ 1, OsJAZ1, EG2/OsJAZ1, JAZ1/EG2 | Detail |
| CX4g036062 | 4:28,646,133-28,647,896 | - | C1H4g20973 | C2H4g28993 | LOC_Os04g55930 | Os04g0653100 | - | Detail |
| CX4g034519 | 4:28,650,185-28,653,556 | + | C1H4g27383 | C2H4g12547 | LOC_Os04g55940 | Os04g0653200 | OsCAX3 | Detail |
| CX4g033116 | 4:28,664,866-28,670,411 | + | C1H4g13362 | C2H4g18627 | LOC_Os04g55960 | Os04g0653400 | - | Detail |
| CX4g034984 | 4:28,676,197-28,676,892 | - | - | - | - | - | - | Detail |
| CX4g031647 | 4:28,679,738-28,683,633 | + | C1H4g12359 | C2H4g04898 | LOC_Os04g55970 | Os04g0653600 | - | Detail |
| CX4g034121 | 4:28,687,656-28,687,979 | - | - | C2H4g03477 | LOC_Os04g56010 | - | - | Detail |
| CX4g035335 | 4:28,690,455-28,691,116 | - | C1H4g06436 | C2H4g01694 | - | - | - | Detail |
| CX4g032215 | 4:28,693,797-28,694,201 | - | C1H4g26365 | C2H4g13579 | LOC_Os04g56040 | Os04g0654400 | - | Detail |
| CX4g031454 | 4:28,702,744-28,707,429 | + | C1H4g14701 | C2H4g22020 | LOC_Os04g56060 | Os04g0654600 | - | Detail |
| CX4g034657 | 4:28,717,494-28,719,929 | - | C1H4g04876 | C2H4g17724 | LOC_Os04g56080 | Os04g0654800 | SDRLK-55 | Detail |
| CX4g035423 | 4:28,725,123-28,727,573 | + | C1H4g04876 | C2H4g14024 | LOC_Os04g56090 | Os04g0655000 | SDRLK-33 | Detail |
| CX4g032288 | 4:28,751,408-28,752,600 | + | C1H4g04876 | C2H4g14879 | LOC_Os04g56110 | Os04g0655300 | OsRLCK168 | Detail |
| CX4g033115 | 4:28,757,576-28,758,715 | - | C1H4g27782 | C2H4g02357 | LOC_Os04g56120 | Os04g0655400 | - | Detail |
| CX4g033679 | 4:28,775,592-28,776,950 | - | C1H4g27782 | C2H4g10579 | LOC_Os04g56120 | Os04g0655400 | - | Detail |