| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g07073 | 3:27,325,420-27,328,249 | - | C2H3g02088 | CX3g028369 | LOC_Os03g51010 | Os03g0719400 | - | Detail |
| C1H3g18727 | 3:27,333,598-27,340,771 | - | C2H3g19826 | CX3g030509 | LOC_Os03g51020 | Os03g0719500 | - | Detail |
| C1H3g17828 | 3:27,343,601-27,351,321 | - | C2H3g21521 | CX3g025792 | LOC_Os03g51030 | Os03g0719800 | PHYA, phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA | Detail |
| C1H3g02668 | 3:27,355,410-27,357,660 | - | C2H3g23219 | CX3g027542 | LOC_Os03g51040 | Os03g0719850 | - | Detail |
| C1H3g04945 | 3:27,359,144-27,362,873 | - | C2H3g09005 | CX3g029279 | LOC_Os03g51050 | Os03g0719900 | - | Detail |
| C1H3g17570 | 3:27,375,407-27,383,857 | + | C2H3g13711 | CX3g026462 | LOC_Os03g51080 | Os03g0720300 | - | Detail |
| C1H3g14449 | 3:27,387,267-27,388,529 | + | C2H3g28128 | CX3g027259 | LOC_Os03g51090 | Os03g0720400 | - | Detail |
| C1H3g00523 | 3:27,390,529-27,391,045 | + | C2H3g18749 | CX11g011204 | LOC_Os11g37260 | - | - | Detail |
| C1H3g18844 | 3:27,405,048-27,407,087 | + | C2H3g28128 | CX3g027259 | LOC_Os03g51090 | Os03g0720400 | - | Detail |
| C1H3g11639 | 3:27,407,361-27,409,515 | + | C2H3g30385 | - | - | - | - | Detail |
| C1H3g16507 | 3:27,419,162-27,420,717 | + | C2H3g13711 | CX3g026462 | LOC_Os03g51080 | Os03g0720300 | - | Detail |
| C1H3g27041 | 3:27,437,250-27,438,670 | + | C2H3g08962 | CX3g028983 | LOC_Os03g51110 | Os03g0720800 | Os2R_MYB41 | Detail |
| C1H3g28337 | 3:27,449,102-27,471,954 | + | C2H3g28611 | CX3g027802 | LOC_Os03g51140 | Os03g0721200 | - | Detail |
| C1H3g18786 | 3:27,472,007-27,474,325 | - | C2H3g23618 | CX3g029589 | LOC_Os03g51150 | Os03g0721300 | - | Detail |
| C1H3g12607 | 3:27,475,365-27,478,326 | - | C2H3g12002 | CX3g029088 | LOC_Os03g51160 | Os03g0721400 | - | Detail |
| C1H3g28641 | 3:27,482,631-27,485,384 | - | C2H3g26307 | CX3g025020 | LOC_Os03g51180 | - | - | Detail |
| C1H3g29102 | 3:27,493,327-27,493,841 | + | C2H3g16842 | CX3g026654 | LOC_Os03g51200 | Os03g0279200 | - | Detail |
| C1H3g04974 | 3:27,497,998-27,503,722 | + | C2H3g24429 | CX3g029940 | LOC_Os03g51220 | Os03g0722100 | - | Detail |
| C1H3g07846 | 3:27,506,022-27,512,236 | + | C2H3g01976 | CX3g030800 | LOC_Os03g51230 | Os03g0722400 | OsDDM1b | Detail |
| C1H3g19413 | 3:27,513,846-27,516,277 | + | C2H3g17168 | CX3g030963 | LOC_Os03g51240 | Os03g0722500 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g000781 | 1:21,018,996-21,021,698 | + | C1H1g27582 | C2H1g21410 | LOC_Os01g41510 | Os01g0598200 | OsCBL5 | Detail |
| CX1g004325 | 1:21,023,274-21,025,181 | - | C1H1g02719 | C2H1g17362 | LOC_Os01g41530 | Os01g0598400 | - | Detail |
| CX1g003552 | 1:21,028,265-21,029,284 | + | C1H1g20732 | C2H1g22549 | LOC_Os01g41550 | Os01g0598600 | - | Detail |
| CX1g002935 | 1:21,032,796-21,032,948 | + | - | - | - | - | - | Detail |
| CX1g004090 | 1:21,042,563-21,043,960 | - | - | C2H8g16256 | - | Os09g0274025 | - | Detail |
| CX1g002941 | 1:21,049,409-21,055,390 | - | C1H1g13935 | C2H1g01266 | LOC_Os01g41565 | Os01g0598900 | - | Detail |
| CX1g002056 | 1:21,058,493-21,058,645 | + | - | - | - | Os01g0728000 | - | Detail |
| CX1g001518 | 1:21,059,643-21,060,044 | + | - | - | LOC_Os02g52316 | Os02g0760600 | - | Detail |
| CX1g002962 | 1:21,059,681-21,060,007 | - | - | - | - | - | - | Detail |
| CX1g002279 | 1:21,063,911-21,065,958 | + | C1H1g10429 | C2H1g01189 | LOC_Os01g41600 | Os01g0599900 | - | Detail |
| CX1g005403 | 1:21,066,572-21,069,359 | - | C1H1g29825 | C2H1g21759 | LOC_Os01g41610 | Os01g0600000 | - | Detail |
| CX1g002171 | 1:21,074,558-21,080,845 | + | C1H1g25192 | C2H1g02182 | LOC_Os01g41630 | Os01g0600200 | - | Detail |
| CX1g001679 | 1:21,081,900-21,084,893 | + | C1H1g30617 | C2H1g28265 | LOC_Os01g41640 | Os01g0600300 | - | Detail |
| CX1g002399 | 1:21,086,246-21,088,414 | + | C1H1g19876 | C2H1g28719 | LOC_Os01g41650 | Os01g0600400 | - | Detail |
| CX1g006638 | 1:21,088,882-21,090,278 | - | C1H1g07112 | C2H1g02571 | LOC_Os01g41660 | Os01g0600500 | - | Detail |
| CX1g005865 | 1:21,091,848-21,092,651 | - | - | - | LOC_Os01g41670 | - | - | Detail |
| CX1g003529 | 1:21,094,225-21,094,515 | - | - | - | - | - | - | Detail |
| CX1g001346 | 1:21,099,751-21,100,536 | + | C1H3g28027 | C2H9g03060 | LOC_Os01g41710 | Os01g0600900 | - | Detail |
| CX1g001544 | 1:21,103,132-21,107,294 | - | C1H1g17742 | C2H1g21712 | LOC_Os01g41720 | Os01g0601000 | - | Detail |
| CX1g003177 | 1:21,115,335-21,119,577 | + | C1H1g23873 | C2H1g00437 | LOC_Os01g41730 | Os01g0601200 | - | Detail |