| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g16030 | 4:20,604,880-20,606,065 | - | C2H4g00702 | CX4g033693 | LOC_Os04g39590 | Os04g0472100 | - | Detail |
| C1H4g00073 | 4:20,614,279-20,618,635 | + | C2H4g19420 | CX4g034292 | LOC_Os04g39610 | Os04g0472300 | - | Detail |
| C1H4g04352 | 4:20,623,859-20,625,361 | + | C2H4g22876 | CX4g035839 | LOC_Os04g39629 | Os04g0306800 | - | Detail |
| C1H4g27433 | 4:20,627,409-20,631,175 | + | C2H4g22876 | CX4g035839 | LOC_Os04g39629 | Os04g0472400 | - | Detail |
| C1H4g18621 | 4:20,634,438-20,638,146 | + | C2H4g05936 | CX4g035839 | LOC_Os04g39650 | Os04g0472500 | - | Detail |
| C1H4g21886 | 4:20,640,550-20,643,687 | + | C2H4g02841 | CX4g035542 | LOC_Os04g39670 | Os04g0472700 | - | Detail |
| C1H4g18594 | 4:20,648,275-20,650,781 | - | C2H4g20727 | CX4g031996 | LOC_Os04g39700 | Os04g0473400 | RPL6 | Detail |
| C1H4g22390 | 4:20,652,338-20,652,839 | - | C2H4g02603 | CX4g036319 | LOC_Os04g39770 | Os04g0473800 | FCP1, FCP1/OsCLE402, Os CLE402, OsCLE402 | Detail |
| C1H4g00302 | 4:20,658,721-20,668,640 | - | C2H4g23069 | CX4g034400 | LOC_Os04g39780 | Os04g0473900 | DWA1 | Detail |
| C1H4g22436 | 4:20,685,532-20,686,945 | - | C2H4g27268 | - | LOC_Os04g39864 | Os04g0474500 | - | Detail |
| C1H4g30851 | 4:20,689,258-20,690,068 | - | C2H4g08296 | - | LOC_Os04g39840 | Os04g0474300 | - | Detail |
| C1H4g08294 | 4:20,693,208-20,698,478 | - | C2H4g06810 | - | LOC_Os04g39840 | Os04g0474500 | - | Detail |
| C1H4g25243 | 4:20,700,221-20,708,124 | - | C2H4g06498 | - | LOC_Os04g39864 | Os04g0474500 | - | Detail |
| C1H4g24332 | 4:20,711,314-20,716,411 | - | C2H4g26901 | - | LOC_Os04g39880 | Os04g0474800 | OsTAGG2, Os4BGlu12 | Detail |
| C1H4g03925 | 4:20,722,945-20,728,104 | - | C2H4g06549 | - | LOC_Os04g39900 | Os04g0474900 | OsTAGG1, Os4BGlu13 | Detail |
| C1H4g27571 | 4:20,730,737-20,733,148 | + | C2H4g15875 | CX4g031592 | LOC_Os04g39910 | Os04g0475100 | SDRLK-61 | Detail |
| C1H4g19181 | 4:20,737,041-20,739,449 | + | C2H4g18216 | CX4g034833 | LOC_Os04g39930 | Os04g0475200 | SDRLK-62 | Detail |
| C1H4g08744 | 4:20,740,948-20,743,475 | + | C2H4g26452 | CX4g033183 | LOC_Os04g39940 | Os04g0475250 | - | Detail |
| C1H4g16959 | 4:20,746,009-20,746,536 | - | C2H4g17863 | CX4g035822 | LOC_Os04g39950 | Os04g0475300 | - | Detail |
| C1H4g29172 | 4:20,749,146-20,750,381 | - | C2H4g05329 | CX4g033449 | LOC_Os04g39970 | Os04g0475500 | OsV4 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX4g035744 | 4:25,988,146-25,992,706 | + | C1H4g01630 | C2H4g05473 | LOC_Os04g51120 | Os04g0599900 | - | Detail |
| CX4g035030 | 4:25,995,656-25,997,411 | + | C1H4g04836 | C2H4g10442 | LOC_Os04g51130 | Os04g0600000 | - | Detail |
| CX4g035889 | 4:25,998,240-25,999,503 | - | C1H4g15893 | C2H4g25284 | LOC_Os04g51140 | Os04g0600100 | - | Detail |
| CX4g035681 | 4:26,000,342-26,002,167 | - | C1H4g02523 | C2H4g12319 | LOC_Os04g51150 | Os04g0600200 | AOX1A, Ao1-1, AOX1a, OsAOX1a, AOX 1a | Detail |
| CX4g036218 | 4:26,004,737-26,005,942 | - | C1H4g06092 | C2H4g13155 | LOC_Os04g51160 | Os04g0600300 | AOX1B, AOX1b, OsAOX1b | Detail |
| CX4g036257 | 4:26,007,793-26,010,078 | - | C1H4g28733 | C2H4g11382 | LOC_Os04g51166 | Os04g0600400 | - | Detail |
| CX4g033183 | 4:26,010,937-26,016,103 | - | C1H4g04973 | C2H4g16073 | LOC_Os04g51172 | Os04g0600500 | OsBRXL3 | Detail |
| CX4g033914 | 4:26,021,907-26,022,056 | + | - | - | - | - | - | Detail |
| CX4g032625 | 4:26,024,675-26,028,676 | - | C1H4g07853 | C2H4g00138 | LOC_Os04g51180 | Os04g0600800 | COLD1 | Detail |
| CX4g033956 | 4:26,030,623-26,034,197 | - | C1H4g08504 | C2H4g09942 | LOC_Os04g51190 | Os04g0600900 | GRF3, OsGRF3 | Detail |
| CX4g032272 | 4:26,047,237-26,048,605 | - | C1H4g18677 | C2H4g25560 | LOC_Os04g51240 | Os04g0601400 | - | Detail |
| CX4g033025 | 4:26,050,069-26,051,430 | - | C1H4g11359 | C2H4g10254 | LOC_Os04g51250 | Os04g0601500 | - | Detail |
| CX4g034624 | 4:26,051,601-26,055,751 | + | C1H4g26178 | C2H4g14874 | LOC_Os04g51260 | Os04g0602000 | - | Detail |
| CX4g036413 | 4:26,056,405-26,057,259 | - | C1H4g02715 | C2H4g01351 | LOC_Os04g51270 | Os04g0601700 | - | Detail |
| CX4g033882 | 4:26,064,511-26,066,765 | - | C1H4g26391 | C2H4g21768 | LOC_Os04g51310 | Os04g0602200 | - | Detail |
| CX4g033318 | 4:26,068,349-26,070,616 | - | C1H4g19881 | C2H4g22043 | LOC_Os04g51320 | Os04g0602300 | - | Detail |
| CX4g034293 | 4:26,072,949-26,076,349 | - | C1H4g05144 | C2H4g12426 | LOC_Os04g51330 | Os04g0602400 | - | Detail |
| CX4g033998 | 4:26,079,939-26,083,141 | + | C1H4g22875 | C2H4g05437 | LOC_Os04g51340 | Os04g0602500 | - | Detail |
| CX4g032956 | 4:26,084,872-26,087,283 | + | C1H4g12838 | C2H4g15861 | LOC_Os04g51350 | Os04g0602600 | MPR25 | Detail |
| CX4g034077 | 4:26,088,029-26,090,337 | - | C1H4g06807 | C2H4g20183 | LOC_Os04g51360 | Os04g0602700 | - | Detail |