| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g13726 | 3:20,390,861-20,393,442 | + | C2H3g25116 | CX3g029359 | - | - | - | Detail |
| C1H3g03200 | 3:20,400,373-20,403,482 | + | C2H3g24537 | CX3g026919 | LOC_Os03g38720 | Os03g0583700 | OsUMP1 | Detail |
| C1H3g23310 | 3:20,409,091-20,411,260 | + | C2H3g24800 | CX3g030948 | LOC_Os03g38730 | Os03g0583800 | - | Detail |
| C1H3g04436 | 3:20,411,565-20,427,058 | - | C2H3g29289 | CX3g030903 | LOC_Os03g38740 | Os03g0583900 | - | Detail |
| C1H3g11527 | 3:20,435,050-20,436,973 | + | C2H3g12332 | CX3g028700 | LOC_Os03g38790 | Os03g0568500 | - | Detail |
| C1H3g11030 | 3:20,448,120-20,448,479 | - | C2H3g19485 | CX3g025305 | - | - | - | Detail |
| C1H3g31357 | 3:20,448,489-20,449,562 | - | C2H3g19485 | CX3g025305 | - | - | - | Detail |
| C1H3g22207 | 3:20,449,725-20,450,414 | - | C2H3g10367 | CX3g025305 | - | - | - | Detail |
| C1H3g12087 | 3:20,508,216-20,514,216 | - | C2H3g17956 | CX3g028633 | LOC_Os03g38930 | Os03g0586300 | - | Detail |
| C1H3g08754 | 3:20,516,713-20,518,665 | + | C2H3g00038 | CX3g026495 | LOC_Os03g38950 | Os03g0586500 | - | Detail |
| C1H3g06874 | 3:20,519,468-20,522,822 | - | C2H3g11125 | CX3g031261 | LOC_Os03g38960 | Os03g0586600 | - | Detail |
| C1H3g18468 | 3:20,526,963-20,539,604 | - | C2H3g25834 | CX3g028836 | LOC_Os03g38970 | Os03g0586700 | PALD | Detail |
| C1H3g11741 | 3:20,544,749-20,553,095 | - | C2H3g21968 | CX3g027203 | LOC_Os03g38980 | Os03g0586800 | - | Detail |
| C1H3g27042 | 3:20,553,245-20,559,759 | + | C2H3g04567 | CX3g026912 | LOC_Os03g38990 | Os03g0586900 | OsPLS2 | Detail |
| C1H3g17183 | 3:20,561,235-20,564,254 | + | C2H3g23894 | CX3g030907 | LOC_Os03g39000 | Os03g0587000 | - | Detail |
| C1H3g08966 | 3:20,564,750-20,566,265 | + | C2H3g20201 | CX3g026983 | LOC_Os03g39010 | Os03g0587100 | - | Detail |
| C1H3g03134 | 3:20,566,619-20,572,424 | - | C2H3g30660 | CX3g025439 | LOC_Os03g39020 | Os03g0587200 | - | Detail |
| C1H3g06709 | 3:20,589,787-20,592,096 | + | C2H3g22828 | CX3g026068 | LOC_Os03g39040 | Os03g0587600 | - | Detail |
| C1H3g00174 | 3:20,602,278-20,607,223 | + | C2H3g01127 | CX3g026068 | LOC_Os03g39129 | Os03g0588200 | - | Detail |
| C1H3g31500 | 3:20,616,598-20,619,354 | + | C2H3g05989 | CX3g026068 | LOC_Os03g39160 | Os03g0588600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX4g035744 | 4:25,988,146-25,992,706 | + | C1H4g01630 | C2H4g05473 | LOC_Os04g51120 | Os04g0599900 | - | Detail |
| CX4g035030 | 4:25,995,656-25,997,411 | + | C1H4g04836 | C2H4g10442 | LOC_Os04g51130 | Os04g0600000 | - | Detail |
| CX4g035889 | 4:25,998,240-25,999,503 | - | C1H4g15893 | C2H4g25284 | LOC_Os04g51140 | Os04g0600100 | - | Detail |
| CX4g035681 | 4:26,000,342-26,002,167 | - | C1H4g02523 | C2H4g12319 | LOC_Os04g51150 | Os04g0600200 | AOX1A, Ao1-1, AOX1a, OsAOX1a, AOX 1a | Detail |
| CX4g036218 | 4:26,004,737-26,005,942 | - | C1H4g06092 | C2H4g13155 | LOC_Os04g51160 | Os04g0600300 | AOX1B, AOX1b, OsAOX1b | Detail |
| CX4g036257 | 4:26,007,793-26,010,078 | - | C1H4g28733 | C2H4g11382 | LOC_Os04g51166 | Os04g0600400 | - | Detail |
| CX4g033183 | 4:26,010,937-26,016,103 | - | C1H4g04973 | C2H4g16073 | LOC_Os04g51172 | Os04g0600500 | OsBRXL3 | Detail |
| CX4g033914 | 4:26,021,907-26,022,056 | + | - | - | - | - | - | Detail |
| CX4g032625 | 4:26,024,675-26,028,676 | - | C1H4g07853 | C2H4g00138 | LOC_Os04g51180 | Os04g0600800 | COLD1 | Detail |
| CX4g033956 | 4:26,030,623-26,034,197 | - | C1H4g08504 | C2H4g09942 | LOC_Os04g51190 | Os04g0600900 | GRF3, OsGRF3 | Detail |
| CX4g032272 | 4:26,047,237-26,048,605 | - | C1H4g18677 | C2H4g25560 | LOC_Os04g51240 | Os04g0601400 | - | Detail |
| CX4g033025 | 4:26,050,069-26,051,430 | - | C1H4g11359 | C2H4g10254 | LOC_Os04g51250 | Os04g0601500 | - | Detail |
| CX4g034624 | 4:26,051,601-26,055,751 | + | C1H4g26178 | C2H4g14874 | LOC_Os04g51260 | Os04g0602000 | - | Detail |
| CX4g036413 | 4:26,056,405-26,057,259 | - | C1H4g02715 | C2H4g01351 | LOC_Os04g51270 | Os04g0601700 | - | Detail |
| CX4g033882 | 4:26,064,511-26,066,765 | - | C1H4g26391 | C2H4g21768 | LOC_Os04g51310 | Os04g0602200 | - | Detail |
| CX4g033318 | 4:26,068,349-26,070,616 | - | C1H4g19881 | C2H4g22043 | LOC_Os04g51320 | Os04g0602300 | - | Detail |
| CX4g034293 | 4:26,072,949-26,076,349 | - | C1H4g05144 | C2H4g12426 | LOC_Os04g51330 | Os04g0602400 | - | Detail |
| CX4g033998 | 4:26,079,939-26,083,141 | + | C1H4g22875 | C2H4g05437 | LOC_Os04g51340 | Os04g0602500 | - | Detail |
| CX4g032956 | 4:26,084,872-26,087,283 | + | C1H4g12838 | C2H4g15861 | LOC_Os04g51350 | Os04g0602600 | MPR25 | Detail |
| CX4g034077 | 4:26,088,029-26,090,337 | - | C1H4g06807 | C2H4g20183 | LOC_Os04g51360 | Os04g0602700 | - | Detail |