| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g04613 | 3:6,241,187-6,242,617 | - | C2H3g04826 | CX3g030910 | LOC_Os03g12940 | Os03g0232000 | OsFBO13 | Detail |
| C1H3g30000 | 3:6,247,635-6,251,913 | - | C2H3g04774 | CX3g029956 | LOC_Os03g12950 | Os03g0232200 | - | Detail |
| C1H3g29239 | 3:6,268,484-6,268,779 | + | C2H4g27073 | - | - | - | - | Detail |
| C1H3g14582 | 3:6,268,806-6,269,027 | + | C2H4g11700 | CX3g029446 | - | Os02g0324200 | - | Detail |
| C1H3g07150 | 3:6,279,894-6,280,322 | + | C2H3g26123 | CX3g028212 | LOC_Os03g12990 | Os03g0232400 | - | Detail |
| C1H3g22613 | 3:6,284,313-6,284,713 | - | C2H3g04799 | CX3g028040 | - | Os02g0738300 | - | Detail |
| C1H3g28102 | 3:6,284,992-6,287,738 | + | C2H3g26449 | CX3g028651 | LOC_Os03g13000 | Os03g0232500 | - | Detail |
| C1H3g02271 | 3:6,293,199-6,294,578 | - | C2H3g15250 | CX3g031218 | LOC_Os03g13010 | Os03g0232600 | ELF1, OsPUB31, OsPUB75, TUD1, OsTUD1 | Detail |
| C1H3g01497 | 3:6,310,077-6,311,798 | - | C2H3g13166 | CX3g029569 | LOC_Os03g13030 | Os03g0232800 | - | Detail |
| C1H3g06697 | 3:6,312,892-6,316,654 | - | C2H3g05297 | CX3g027690 | LOC_Os03g13040 | Os03g0232900 | - | Detail |
| C1H3g26874 | 3:6,329,350-6,330,859 | + | C2H3g03038 | CX3g025391 | LOC_Os03g13050 | Os03g0233000 | - | Detail |
| C1H3g16800 | 3:6,332,793-6,333,953 | - | C2H3g18690 | CX3g030154 | LOC_Os03g13070 | Os03g0233200 | - | Detail |
| C1H3g06079 | 3:6,335,141-6,338,733 | - | C2H3g14812 | CX3g029185 | LOC_Os03g13080 | Os03g0233300 | OsLysM-RLK2, OsLYK5, OsNFR5/OsRLK2 | Detail |
| C1H3g06632 | 3:6,341,866-6,345,383 | + | C2H3g23005 | CX3g028548 | LOC_Os03g13100 | Os03g0233500 | - | Detail |
| C1H3g16553 | 3:6,349,440-6,353,368 | + | C2H3g09799 | CX3g029407 | LOC_Os03g13130 | Os03g0233800 | - | Detail |
| C1H3g27731 | 3:6,354,094-6,354,936 | + | C2H3g17247 | CX3g025432 | LOC_Os03g13140 | Os03g0233900 | Hb1, OsPgb1.1 | Detail |
| C1H3g19664 | 3:6,357,836-6,358,710 | + | C2H3g00667 | CX3g027207 | LOC_Os03g13150 | Os03g0234000 | - | Detail |
| C1H3g02151 | 3:6,360,956-6,361,945 | + | C2H3g02090 | CX3g030474 | LOC_Os03g13160 | Os03g0234100 | - | Detail |
| C1H3g22268 | 3:6,367,751-6,368,947 | + | C2H3g20297 | CX3g028385 | LOC_Os03g13180 | Os03g0234500 | - | Detail |
| C1H3g22029 | 3:6,370,718-6,375,395 | - | C2H3g00447 | CX3g027164 | LOC_Os03g13190 | Os03g0234600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX4g035663 | 4:25,267,984-25,268,643 | + | - | C2H4g17137 | LOC_Os04g44640 | - | - | Detail |
| CX4g035432 | 4:25,276,044-25,278,053 | - | C1H4g27864 | C2H4g30305 | LOC_Os04g44630 | Os04g0476500 | - | Detail |
| CX4g034030 | 4:25,284,082-25,284,261 | + | - | - | - | Os02g0188201 | - | Detail |
| CX4g033604 | 4:25,284,435-25,290,890 | + | C1H4g10611 | C2H4g03384 | LOC_Os04g49430 | Os04g0583700 | - | Detail |
| CX4g035620 | 4:25,292,473-25,293,341 | + | C1H4g25778 | C2H4g01268 | LOC_Os04g49440 | Os04g0583800 | - | Detail |
| CX4g032810 | 4:25,294,385-25,296,595 | - | C1H4g02637 | C2H4g28246 | LOC_Os04g49450 | Os04g0583900 | OsMYBR1 | Detail |
| CX4g033055 | 4:25,300,927-25,306,927 | - | C1H4g19370 | C2H4g25417 | LOC_Os04g49480 | Os04g0584100 | - | Detail |
| CX4g034658 | 4:25,307,605-25,310,032 | - | C1H4g21934 | C2H4g23268 | LOC_Os04g49490 | Os04g0584300 | - | Detail |
| CX4g033783 | 4:25,314,184-25,318,894 | + | C1H4g16992 | C2H4g28486 | LOC_Os04g49500 | Os04g0584500 | - | Detail |
| CX4g033315 | 4:25,323,904-25,327,677 | + | C1H4g24874 | C2H4g17908 | LOC_Os04g49510 | Os04g0584600 | - | Detail |
| CX4g035131 | 4:25,328,239-25,330,836 | - | C1H4g14312 | C2H4g26759 | LOC_Os04g49520 | Os04g0584700 | - | Detail |
| CX4g033560 | 4:25,331,181-25,334,034 | + | C1H4g08643 | C2H4g09139 | LOC_Os04g49530 | Os04g0584800 | - | Detail |
| CX4g034212 | 4:25,334,578-25,336,867 | - | C1H4g15954 | C2H4g09773 | LOC_Os04g49540 | Os04g0584900 | - | Detail |
| CX4g035392 | 4:25,344,817-25,345,407 | + | - | - | - | Os04g0585050 | - | Detail |
| CX4g033323 | 4:25,349,850-25,355,950 | - | C1H4g04008 | C2H4g30371 | LOC_Os04g49560 | Os04g0585100 | - | Detail |
| CX4g035018 | 4:25,359,237-25,363,032 | - | C1H4g02770 | C2H4g20709 | LOC_Os04g49570 | Os04g0585200 | OsGLR4.1 | Detail |
| CX4g033252 | 4:25,363,961-25,364,128 | + | - | - | - | - | - | Detail |
| CX4g035353 | 4:25,367,486-25,373,152 | - | C1H4g07246 | C2H4g02580 | LOC_Os04g49580 | Os04g0585300 | - | Detail |
| CX4g035330 | 4:25,375,597-25,377,913 | - | C1H4g19488 | C2H4g10022 | LOC_Os04g49590 | Os04g0585400 | - | Detail |
| CX4g033099 | 4:25,379,071-25,380,528 | - | C1H4g16820 | C2H4g11776 | LOC_Os04g49610 | Os04g0585600 | - | Detail |