| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g25284 | 4:26,053,158-26,054,280 | - | C1H4g15893 | CX4g035889 | LOC_Os04g51140 | Os04g0600100 | - | Detail |
| C2H4g12319 | 4:26,054,891-26,057,188 | - | C1H4g02523 | CX4g035681 | LOC_Os04g51150 | Os04g0600200 | AOX1A, Ao1-1, AOX1a, OsAOX1a, AOX 1a | Detail |
| C2H4g13155 | 4:26,057,959-26,060,860 | - | C1H4g06092 | CX4g036218 | LOC_Os04g51160 | Os04g0600300 | AOX1B, AOX1b, OsAOX1b | Detail |
| C2H4g11382 | 4:26,062,604-26,064,996 | - | C1H4g28733 | CX4g036257 | LOC_Os04g51166 | Os04g0600400 | - | Detail |
| C2H4g16073 | 4:26,065,855-26,071,021 | - | C1H4g04973 | CX4g033183 | LOC_Os04g51172 | Os04g0600500 | OsBRXL3 | Detail |
| C2H4g00138 | 4:26,079,042-26,083,754 | - | C1H4g07853 | CX4g032625 | LOC_Os04g51180 | Os04g0600800 | COLD1 | Detail |
| C2H4g09942 | 4:26,085,183-26,089,337 | - | C1H4g08504 | CX4g033956 | LOC_Os04g51190 | Os04g0574500 | - | Detail |
| C2H4g25560 | 4:26,102,155-26,103,523 | - | C1H4g18677 | CX4g032272 | LOC_Os04g51240 | Os04g0601400 | - | Detail |
| C2H4g10254 | 4:26,104,987-26,107,216 | - | C1H4g11359 | CX4g033025 | LOC_Os04g51250 | Os04g0601500 | - | Detail |
| C2H4g14874 | 4:26,106,519-26,110,669 | + | C1H4g26178 | CX4g034624 | LOC_Os04g51260 | Os04g0602000 | - | Detail |
| C2H4g01351 | 4:26,111,323-26,112,177 | - | C1H4g02715 | CX4g036413 | LOC_Os04g51270 | Os04g0601700 | - | Detail |
| C2H4g08450 | 4:26,113,702-26,115,692 | + | C1H4g04277 | - | LOC_Os04g51280 | Os04g0601800 | WSP1 | Detail |
| C2H4g18195 | 4:26,116,346-26,119,282 | + | C1H4g31358 | CX4g031538 | LOC_Os04g51300 | Os04g0602100 | - | Detail |
| C2H4g21768 | 4:26,119,417-26,121,708 | - | C1H4g26391 | CX4g033882 | LOC_Os04g51310 | Os04g0602200 | - | Detail |
| C2H4g22043 | 4:26,123,267-26,125,534 | - | C1H4g19881 | CX4g033318 | LOC_Os04g51320 | Os04g0602300 | - | Detail |
| C2H4g12426 | 4:26,127,370-26,131,567 | - | C1H4g05144 | CX4g034293 | LOC_Os04g51330 | Os04g0602400 | - | Detail |
| C2H4g05437 | 4:26,134,548-26,138,254 | + | C1H4g22875 | CX4g033998 | LOC_Os04g51340 | Os04g0602500 | - | Detail |
| C2H4g15861 | 4:26,139,791-26,142,202 | + | C1H4g12838 | CX4g032956 | LOC_Os04g51350 | Os04g0602600 | MPR25 | Detail |
| C2H4g20183 | 4:26,143,347-26,145,256 | - | C1H4g06807 | CX4g034077 | LOC_Os04g51360 | Os04g0602700 | - | Detail |
| C2H4g18022 | 4:26,146,411-26,154,053 | - | C1H4g07013 | CX4g035673 | LOC_Os04g51370 | Os04g0602800 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX4g035173 | 4:24,687,658-24,687,855 | - | - | - | - | - | - | Detail |
| CX4g033503 | 4:24,690,206-24,692,772 | + | C1H4g26163 | C2H4g17221 | LOC_Os04g48260 | Os04g0571200 | OsSIRH2-14, OsRFPH2-14 | Detail |
| CX4g032813 | 4:24,693,345-24,693,506 | - | - | - | - | - | - | Detail |
| CX4g033945 | 4:24,697,128-24,699,567 | + | C1H4g03569 | C2H4g10186 | LOC_Os04g48270 | Os04g0571300 | - | Detail |
| CX4g036434 | 4:24,720,824-24,722,506 | + | C1H4g23534 | C2H4g15919 | LOC_Os04g48290 | Os04g0571600 | - | Detail |
| CX4g033531 | 4:24,738,190-24,738,345 | - | - | - | - | - | - | Detail |
| CX4g036388 | 4:24,739,254-24,741,311 | + | C1H4g17435 | C2H4g00338 | LOC_Os04g48310 | Os04g0571800 | - | Detail |
| CX4g036221 | 4:24,754,324-24,754,944 | + | C1H4g01528 | C2H4g12960 | LOC_Os04g48330 | Os04g0572200 | - | Detail |
| CX4g033577 | 4:24,758,850-24,760,760 | - | - | - | LOC_Os04g41670 | Os04g0330900 | - | Detail |
| CX4g033927 | 4:24,773,591-24,774,250 | + | C1H4g19022 | C2H4g16947 | LOC_Os04g48350 | Os04g0572400 | OsDREB1E | Detail |
| CX4g034848 | 4:24,792,149-24,800,677 | + | C1H4g24679 | C2H4g29441 | LOC_Os04g48370 | Os04g0572600 | OsNRPD1a, OsNRPD1 | Detail |
| CX4g034449 | 4:24,818,357-24,822,260 | + | C1H4g21662 | C2H4g30282 | LOC_Os04g48390 | Os04g0573000 | OsSPX-MFS1 | Detail |
| CX4g032073 | 4:24,823,467-24,825,610 | + | C1H4g12510 | C2H4g07007 | LOC_Os04g48400 | Os04g0573100 | HTH1 | Detail |
| CX4g035514 | 4:24,827,633-24,832,086 | + | C1H4g01592 | C2H4g10763 | LOC_Os04g48410 | Os04g0573200 | - | Detail |
| CX4g035499 | 4:24,832,355-24,834,685 | - | C1H4g07049 | C2H4g08356 | LOC_Os04g48416 | Os04g0573300 | - | Detail |
| CX4g031389 | 4:24,839,602-24,840,090 | - | - | - | - | Os05g0392900 | - | Detail |
| CX4g034487 | 4:24,840,214-24,840,889 | + | C1H4g22277 | C2H4g05726 | - | - | - | Detail |
| CX4g034878 | 4:24,843,183-24,845,037 | + | C1H4g05653 | C2H4g12182 | LOC_Os04g48460 | Os04g0573900 | - | Detail |
| CX4g035668 | 4:24,855,808-24,857,235 | + | - | C2H4g14493 | LOC_Os04g48480 | Os04g0574100 | - | Detail |
| CX4g036279 | 4:24,863,853-24,865,148 | - | C1H4g16030 | C2H4g03872 | LOC_Os04g48490 | Os04g0574200 | OsFLA1 | Detail |