| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g10769 | 4:23,395,396-23,401,153 | - | C2H4g12110 | CX4g032688 | LOC_Os04g45580 | Os04g0538800 | - | Detail |
| C1H4g30025 | 4:23,406,939-23,407,746 | + | C2H4g10511 | - | LOC_Os04g45590 | Os04g0538900 | - | Detail |
| C1H4g16905 | 4:23,409,931-23,411,211 | + | C2H4g20122 | - | LOC_Os04g45600 | Os04g0539000 | - | Detail |
| C1H4g23975 | 4:23,411,847-23,415,025 | - | C2H4g25192 | CX4g032029 | LOC_Os04g45610 | Os04g0539100 | - | Detail |
| C1H4g17088 | 4:23,418,016-23,419,742 | - | C2H4g19707 | CX4g035647 | LOC_Os04g45630 | Os04g0539300 | - | Detail |
| C1H4g04536 | 4:23,428,238-23,430,862 | + | C2H4g18724 | CX4g033248 | LOC_Os04g45650 | Os04g0539500 | - | Detail |
| C1H4g13934 | 4:23,439,744-23,444,182 | - | C2H4g04312 | CX4g035492 | LOC_Os04g45670 | Os04g0539800 | - | Detail |
| C1H4g18759 | 4:23,451,256-23,452,965 | + | C2H4g29647 | CX4g031384 | LOC_Os04g45690 | Os04g0540200 | OsRIP1 | Detail |
| C1H4g25286 | 4:23,456,657-23,457,743 | + | C2H4g20715 | CX4g033676 | LOC_Os04g45700 | Os04g0540300 | - | Detail |
| C1H4g30808 | 4:23,457,814-23,458,674 | + | C2H4g20715 | CX4g033676 | LOC_Os04g45700 | Os04g0540300 | - | Detail |
| C1H4g25127 | 4:23,459,270-23,463,777 | - | C2H4g10305 | CX4g033064 | LOC_Os04g45720 | Os04g0540600 | - | Detail |
| C1H4g14597 | 4:23,468,787-23,470,455 | - | C2H4g09606 | CX4g036212 | LOC_Os04g45730 | Os04g0540900 | STRK1 | Detail |
| C1H4g08827 | 4:23,489,288-23,493,567 | - | C2H4g10705 | CX4g035032 | LOC_Os04g45750 | Os04g0541100 | - | Detail |
| C1H4g08954 | 4:23,512,752-23,520,292 | + | C2H4g12357 | CX4g033606 | LOC_Os04g45800 | Os04g0541500 | OsLCBK2 | Detail |
| C1H4g13532 | 4:23,524,551-23,525,490 | + | C2H4g17090 | CX4g034688 | LOC_Os04g45810 | Os04g0541700 | HOX22, Oshox22, OsHox22 | Detail |
| C1H4g31215 | 4:23,537,702-23,540,321 | + | C2H4g16789 | CX4g031805 | LOC_Os04g45821 | Os04g0541900 | - | Detail |
| C1H4g01207 | 4:23,550,168-23,553,637 | - | C2H4g15215 | CX4g036589 | LOC_Os04g45860 | Os04g0542200 | - | Detail |
| C1H4g26797 | 4:23,567,628-23,571,774 | - | C2H4g05921 | CX4g034574 | LOC_Os04g45900 | Os04g0542800 | YSL16, OsYSL16, Os-YSL16, OsYs14 | Detail |
| C1H4g00917 | 4:23,580,070-23,583,432 | + | C2H4g03772 | CX4g031872 | LOC_Os04g45910 | Os04g0542900 | - | Detail |
| C1H4g12022 | 4:23,583,743-23,585,388 | - | C2H4g18044 | CX4g033127 | LOC_Os04g45920 | Os04g0543000 | OsRLCK155 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX4g035173 | 4:24,687,658-24,687,855 | - | - | - | - | - | - | Detail |
| CX4g033503 | 4:24,690,206-24,692,772 | + | C1H4g26163 | C2H4g17221 | LOC_Os04g48260 | Os04g0571200 | OsSIRH2-14, OsRFPH2-14 | Detail |
| CX4g032813 | 4:24,693,345-24,693,506 | - | - | - | - | - | - | Detail |
| CX4g033945 | 4:24,697,128-24,699,567 | + | C1H4g03569 | C2H4g10186 | LOC_Os04g48270 | Os04g0571300 | - | Detail |
| CX4g036434 | 4:24,720,824-24,722,506 | + | C1H4g23534 | C2H4g15919 | LOC_Os04g48290 | Os04g0571600 | - | Detail |
| CX4g033531 | 4:24,738,190-24,738,345 | - | - | - | - | - | - | Detail |
| CX4g036388 | 4:24,739,254-24,741,311 | + | C1H4g17435 | C2H4g00338 | LOC_Os04g48310 | Os04g0571800 | - | Detail |
| CX4g036221 | 4:24,754,324-24,754,944 | + | C1H4g01528 | C2H4g12960 | LOC_Os04g48330 | Os04g0572200 | - | Detail |
| CX4g033577 | 4:24,758,850-24,760,760 | - | - | - | LOC_Os04g41670 | Os04g0330900 | - | Detail |
| CX4g033927 | 4:24,773,591-24,774,250 | + | C1H4g19022 | C2H4g16947 | LOC_Os04g48350 | Os04g0572400 | OsDREB1E | Detail |
| CX4g034848 | 4:24,792,149-24,800,677 | + | C1H4g24679 | C2H4g29441 | LOC_Os04g48370 | Os04g0572600 | OsNRPD1a, OsNRPD1 | Detail |
| CX4g034449 | 4:24,818,357-24,822,260 | + | C1H4g21662 | C2H4g30282 | LOC_Os04g48390 | Os04g0573000 | OsSPX-MFS1 | Detail |
| CX4g032073 | 4:24,823,467-24,825,610 | + | C1H4g12510 | C2H4g07007 | LOC_Os04g48400 | Os04g0573100 | HTH1 | Detail |
| CX4g035514 | 4:24,827,633-24,832,086 | + | C1H4g01592 | C2H4g10763 | LOC_Os04g48410 | Os04g0573200 | - | Detail |
| CX4g035499 | 4:24,832,355-24,834,685 | - | C1H4g07049 | C2H4g08356 | LOC_Os04g48416 | Os04g0573300 | - | Detail |
| CX4g031389 | 4:24,839,602-24,840,090 | - | - | - | - | Os05g0392900 | - | Detail |
| CX4g034487 | 4:24,840,214-24,840,889 | + | C1H4g22277 | C2H4g05726 | - | - | - | Detail |
| CX4g034878 | 4:24,843,183-24,845,037 | + | C1H4g05653 | C2H4g12182 | LOC_Os04g48460 | Os04g0573900 | - | Detail |
| CX4g035668 | 4:24,855,808-24,857,235 | + | - | C2H4g14493 | LOC_Os04g48480 | Os04g0574100 | - | Detail |
| CX4g036279 | 4:24,863,853-24,865,148 | - | C1H4g16030 | C2H4g03872 | LOC_Os04g48490 | Os04g0574200 | OsFLA1 | Detail |