| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g10607 | 3:13,300,845-13,301,153 | + | C2H3g19573 | CX3g029933 | LOC_Os03g25990 | Os03g0377100 | - | Detail |
| C1H3g00737 | 3:13,303,708-13,310,872 | + | C2H3g08354 | CX3g025508 | LOC_Os03g26000 | Os03g0377300 | - | Detail |
| C1H3g02559 | 3:13,311,513-13,320,069 | + | C2H3g12662 | CX3g025508 | LOC_Os03g26030 | Os03g0377500 | - | Detail |
| C1H3g26368 | 3:13,322,889-13,326,905 | - | C2H3g21234 | CX3g027228 | LOC_Os03g26044 | Os03g0377700 | OsCSLA5 | Detail |
| C1H3g10865 | 3:13,337,059-13,338,472 | + | C2H3g12418 | CX3g028269 | LOC_Os03g26070 | - | - | Detail |
| C1H3g26564 | 3:13,338,901-13,342,667 | + | C2H3g02469 | CX3g030093 | LOC_Os03g26080 | Os03g0378000 | OsAPY2 | Detail |
| C1H3g21733 | 3:13,352,760-13,359,155 | + | C2H3g20387 | CX3g025812 | LOC_Os03g26090 | Os03g0378200 | - | Detail |
| C1H3g27600 | 3:13,370,971-13,372,082 | - | C2H3g06097 | - | - | - | - | Detail |
| C1H3g28191 | 3:13,388,521-13,392,838 | + | C2H3g12084 | CX3g029246 | LOC_Os03g26200 | Os03g0379100 | - | Detail |
| C1H3g18201 | 3:13,395,395-13,397,375 | + | C2H3g20720 | CX3g024992 | LOC_Os03g26210 | Os03g0379300 | OsIRO3 | Detail |
| C1H3g08145 | 3:13,398,049-13,400,082 | - | C2H3g11313 | CX3g025371 | LOC_Os03g26220 | Os03g0379400 | - | Detail |
| C1H3g10024 | 3:13,401,803-13,403,772 | + | C2H3g22224 | CX3g029639 | LOC_Os03g26229 | Os03g0379500 | - | Detail |
| C1H3g30785 | 3:13,406,901-13,419,581 | + | C2H3g19366 | CX3g025942 | LOC_Os03g26250 | Os03g0379801 | - | Detail |
| C1H3g18376 | 3:13,425,327-13,426,013 | + | C2H3g00664 | - | LOC_Os03g26280 | - | - | Detail |
| C1H3g16642 | 3:13,426,143-13,426,821 | + | - | - | - | - | - | Detail |
| C1H3g09234 | 3:13,484,737-13,486,294 | - | C2H3g10036 | CX3g026850 | LOC_Os03g26430 | Os03g0381000 | - | Detail |
| C1H3g09560 | 3:13,487,854-13,494,339 | + | C2H3g18489 | CX3g026175 | LOC_Os03g26440 | Os03g0381100 | - | Detail |
| C1H3g28910 | 3:13,496,436-13,499,665 | + | C2H3g11401 | CX3g027360 | LOC_Os03g26450 | Os03g0381200 | - | Detail |
| C1H3g07176 | 3:13,500,077-13,502,107 | - | C2H3g07469 | CX3g027436 | LOC_Os03g26460 | Os03g0381300 | - | Detail |
| C1H3g24130 | 3:13,505,302-13,507,936 | + | C2H3g11622 | CX3g031147 | LOC_Os03g26480 | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX4g034275 | 4:23,791,118-23,792,927 | + | C1H4g09912 | C2H4g02131 | LOC_Os04g46670 | Os04g0552400 | - | Detail |
| CX4g032133 | 4:23,796,829-23,797,758 | + | C1H4g09899 | C2H4g08222 | LOC_Os04g46680 | Os04g0552700 | - | Detail |
| CX4g032057 | 4:23,803,101-23,804,138 | + | C1H4g27612 | C2H4g05748 | LOC_Os04g46700 | Os04g0553000 | - | Detail |
| CX4g034044 | 4:23,812,589-23,814,196 | - | C1H4g10188 | C2H4g09046 | LOC_Os04g46730 | Os04g0553300 | - | Detail |
| CX4g032963 | 4:23,817,036-23,818,764 | - | C1H4g00564 | C2H4g10015 | LOC_Os04g46740 | Os04g0553500 | - | Detail |
| CX4g035719 | 4:23,821,773-23,822,003 | + | - | - | - | - | - | Detail |
| CX4g034448 | 4:23,825,187-23,829,526 | - | C1H4g08701 | C2H4g07798 | LOC_Os04g46750 | Os04g0553800 | - | Detail |
| CX4g032502 | 4:23,831,379-23,833,390 | - | C1H4g12111 | C2H4g20987 | LOC_Os04g46760 | Os04g0554000 | - | Detail |
| CX4g031950 | 4:23,835,846-23,838,793 | + | C1H4g05524 | C2H4g26256 | LOC_Os04g46780 | Os04g0554200 | - | Detail |
| CX4g033479 | 4:23,839,741-23,840,412 | - | - | C2H4g16654 | LOC_Os04g46790 | Os04g0554300 | - | Detail |
| CX4g032125 | 4:23,841,487-23,841,702 | - | - | - | - | - | - | Detail |
| CX4g033498 | 4:23,843,424-23,843,816 | + | C1H4g29756 | C2H4g08626 | LOC_Os04g46810 | Os04g0554500 | OsR3L1, OsHyPRP06/R3L1, OsHyPRP06 | Detail |
| CX4g034369 | 4:23,853,711-23,854,124 | + | C1H4g22406 | C2H4g06180 | LOC_Os04g46830 | Os04g0554800 | - | Detail |
| CX4g035831 | 4:23,859,183-23,859,734 | - | C1H4g22897 | C2H4g00137 | LOC_Os04g46850 | Os04g0554900 | - | Detail |
| CX4g032521 | 4:23,866,448-23,868,571 | + | C1H4g08480 | C2H4g00621 | LOC_Os04g46860 | Os04g0555000 | OsHAM3 | Detail |
| CX4g034890 | 4:23,882,302-23,882,544 | - | - | - | - | - | - | Detail |
| CX4g033324 | 4:23,884,396-23,885,151 | - | - | - | - | - | - | Detail |
| CX4g032555 | 4:23,887,833-23,889,606 | - | C1H4g10618 | C2H4g19260 | LOC_Os04g46880 | Os04g0555300 | - | Detail |
| CX4g034039 | 4:23,895,675-23,899,367 | + | C1H4g20955 | C2H4g01436 | LOC_Os07g04850 | Os04g0555400 | - | Detail |
| CX4g033508 | 4:23,900,269-23,919,743 | - | C1H4g31360 | C2H4g27783 | LOC_Os04g46892 | Os04g0555500 | - | Detail |