| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g03441 | 3:994,508-997,871 | - | C2H3g02407 | CX3g026290 | LOC_Os03g02850 | Os03g0120300 | - | Detail |
| C1H3g10934 | 3:999,392-1,000,895 | - | C2H3g11600 | CX3g025360 | LOC_Os03g02860 | Os03g0120400 | - | Detail |
| C1H3g08539 | 3:1,007,973-1,011,218 | + | C2H3g16408 | CX3g028149 | LOC_Os03g02890 | Os03g0120800 | - | Detail |
| C1H3g19352 | 3:1,027,333-1,028,259 | + | C2H3g18948 | CX3g029289 | LOC_Os03g02900 | Os03g0120900 | - | Detail |
| C1H3g28264 | 3:1,045,562-1,049,655 | - | C2H3g18738 | CX3g025034 | LOC_Os03g02920 | Os03g0121200 | - | Detail |
| C1H3g20047 | 3:1,052,087-1,053,631 | - | C2H3g23557 | CX3g026688 | LOC_Os03g02939 | Os03g0121300 | - | Detail |
| C1H3g01141 | 3:1,060,364-1,061,638 | + | C2H3g04065 | CX3g025202 | LOC_Os03g02960 | Os03g0121700 | - | Detail |
| C1H3g02111 | 3:1,061,738-1,070,945 | - | C2H3g16968 | CX3g027774 | LOC_Os03g02970 | Os03g0121800 | DCL1, Dcl1, OsDCL1, osDCL1, Os-DCL1 | Detail |
| C1H3g23785 | 3:1,082,343-1,088,301 | + | C2H3g23905 | CX3g028931 | LOC_Os03g02980 | Os03g0122000 | - | Detail |
| C1H3g05090 | 3:1,096,037-1,096,413 | + | C2H3g27024 | - | - | - | - | Detail |
| C1H3g07706 | 3:1,096,600-1,099,509 | + | C2H3g24994 | CX3g026004 | LOC_Os03g03000 | Os03g0122100 | - | Detail |
| C1H3g24387 | 3:1,102,330-1,104,223 | - | C2H3g11967 | CX3g025069 | LOC_Os03g03020 | Os03g0122200 | - | Detail |
| C1H3g05611 | 3:1,105,304-1,111,129 | - | C2H3g05774 | CX3g031243 | LOC_Os03g03034 | Os03g0122300 | - | Detail |
| C1H3g26838 | 3:1,126,687-1,131,268 | - | C2H3g15040 | CX3g027036 | LOC_Os03g03070 | Os03g0122600 | - | Detail |
| C1H3g05142 | 3:1,150,988-1,152,633 | - | C2H3g18287 | CX3g025481 | LOC_Os03g03100 | Os03g0834466 | - | Detail |
| C1H3g05064 | 3:1,164,019-1,171,711 | - | C2H9g16327 | CX3g025474 | LOC_Os04g22720 | Os08g0392500 | - | Detail |
| C1H3g18665 | 3:1,174,055-1,174,690 | + | C2H3g16267 | CX3g031045 | - | - | - | Detail |
| C1H3g16789 | 3:1,175,364-1,178,417 | + | C2H3g19854 | CX3g030103 | LOC_Os03g03130 | Os03g0123100 | OsSCE2 | Detail |
| C1H3g27844 | 3:1,179,722-1,181,180 | + | C2H3g21601 | CX3g026041 | LOC_Os03g03140 | Os03g0123200 | - | Detail |
| C1H3g09795 | 3:1,184,106-1,188,005 | + | C2H3g04889 | CX3g029979 | LOC_Os03g03150 | Os03g0123300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX4g031644 | 4:22,895,067-22,895,366 | - | - | C2H4g02511 | LOC_Os04g44880 | Os04g0531200 | - | Detail |
| CX4g035695 | 4:22,897,502-22,901,226 | + | C1H4g10707 | C2H4g12834 | LOC_Os04g44890 | Os04g0531300 | - | Detail |
| CX4g036569 | 4:22,904,117-22,904,698 | + | - | - | - | - | - | Detail |
| CX4g036523 | 4:22,905,854-22,907,737 | - | C1H4g31207 | C2H4g25391 | LOC_Os04g44900 | Os04g0531400 | - | Detail |
| CX4g033866 | 4:22,909,971-22,918,452 | + | C1H4g31207 | C2H4g22643 | LOC_Os04g44920 | Os04g0531700 | - | Detail |
| CX4g032989 | 4:22,926,733-22,928,131 | - | C1H4g07887 | C2H4g10841 | LOC_Os04g44950 | Os04g0531900 | - | Detail |
| CX4g035062 | 4:22,932,822-22,934,543 | - | C1H4g29288 | C2H4g11471 | LOC_Os04g44980 | Os04g0532100 | - | Detail |
| CX4g032440 | 4:22,937,452-22,937,601 | + | - | - | - | Os04g0532200 | - | Detail |
| CX4g036373 | 4:22,938,645-22,940,047 | + | C1H4g29914 | C2H4g28812 | LOC_Os04g45000 | Os04g0532400 | - | Detail |
| CX4g034071 | 4:22,942,380-22,943,601 | - | C1H4g23933 | C2H4g21448 | LOC_Os04g45010 | Os04g0532500 | - | Detail |
| CX4g031376 | 4:22,964,714-22,965,373 | - | - | - | - | Os04g0532700 | - | Detail |
| CX4g036390 | 4:22,971,892-22,976,844 | + | C1H4g04742 | C2H4g02808 | LOC_Os04g45040 | Os04g0533000 | - | Detail |
| CX4g032901 | 4:22,989,720-22,993,026 | - | C1H4g12380 | C2H4g10200 | LOC_Os04g45070 | Os04g0533300 | - | Detail |
| CX4g031506 | 4:23,000,879-23,002,772 | - | C1H4g03742 | C2H4g06912 | LOC_Os04g45090 | Os04g0533500 | - | Detail |
| CX4g034080 | 4:23,005,390-23,005,587 | - | - | - | - | Os04g0533602 | - | Detail |
| CX4g032173 | 4:23,006,446-23,007,794 | + | C1H4g04293 | C2H4g13325 | LOC_Os04g45110 | Os04g0533700 | - | Detail |
| CX4g034142 | 4:23,009,639-23,010,957 | + | C1H4g02662 | C2H4g03644 | LOC_Os04g45110 | Os04g0533800 | - | Detail |
| CX4g035061 | 4:23,011,795-23,012,363 | - | C1H4g24399 | C2H4g29508 | LOC_Os04g45130 | Os04g0533900 | - | Detail |
| CX4g031541 | 4:23,015,446-23,015,745 | - | - | - | - | - | - | Detail |
| CX4g035081 | 4:23,016,225-23,018,320 | + | C1H4g27874 | C2H4g00685 | LOC_Os04g45140 | Os04g0534000 | - | Detail |