| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g01900 | 3:24,775,920-24,778,940 | - | C2H3g20768 | CX3g030404 | LOC_Os03g46660 | Os03g0669300 | - | Detail |
| C1H3g19071 | 3:24,784,668-24,786,240 | + | C2H3g23453 | CX3g029156 | LOC_Os03g46110 | Os03g0663900 | EPAD1 | Detail |
| C1H3g28800 | 3:24,789,046-24,790,599 | + | C2H3g11932 | CX3g027229 | LOC_Os03g46681 | Os03g0669600 | - | Detail |
| C1H3g21247 | 3:24,793,959-24,795,830 | - | C2H3g02411 | CX3g025010 | LOC_Os03g46690 | Os03g0669900 | - | Detail |
| C1H3g23850 | 3:24,796,112-24,801,862 | + | C2H3g12571 | CX3g026592 | LOC_Os03g46710 | Os03g0669800 | - | Detail |
| C1H3g12142 | 3:24,804,774-24,805,601 | - | C2H3g22513 | CX3g030274 | LOC_Os03g46720 | Os03g0669900 | - | Detail |
| C1H3g06816 | 3:24,807,809-24,812,058 | - | C2H3g10273 | CX3g027101 | LOC_Os03g46740 | Os03g0670100 | - | Detail |
| C1H3g09360 | 3:24,812,188-24,814,741 | + | C2H3g22557 | CX3g029731 | LOC_Os03g46750 | Os03g0670200 | - | Detail |
| C1H3g19284 | 3:24,821,749-24,822,829 | + | C2H3g25601 | CX3g026475 | LOC_Os03g46770 | Os03g0670700 | - | Detail |
| C1H3g25865 | 3:24,830,682-24,831,800 | + | C2H3g03723 | CX3g027784 | LOC_Os03g46790 | Os03g0671000 | - | Detail |
| C1H3g02739 | 3:24,858,955-24,863,514 | - | C2H3g18432 | CX3g027388 | LOC_Os03g46860 | Os03g0671800 | - | Detail |
| C1H3g03694 | 3:24,883,691-24,887,954 | - | C2H3g20149 | CX3g029841 | LOC_Os03g46910 | Os03g0672300 | OsPK8 | Detail |
| C1H3g13145 | 3:24,888,525-24,891,487 | - | C2H3g14853 | CX3g027713 | LOC_Os03g46920 | Os03g0672400 | - | Detail |
| C1H3g30917 | 3:24,900,206-24,900,936 | - | C2H3g26281 | CX3g025592 | LOC_Os03g46930 | Os03g0672500 | OsEPFL4 | Detail |
| C1H3g27862 | 3:24,904,548-24,913,504 | - | C2H3g15483 | CX3g025164 | LOC_Os03g46950 | Os03g0672700 | - | Detail |
| C1H3g17355 | 3:24,919,948-24,922,842 | + | C2H3g13483 | CX3g030146 | LOC_Os03g47010 | Os03g0672900 | OsXYN1, OsXyn1 | Detail |
| C1H3g13704 | 3:24,924,537-24,930,234 | - | C2H3g24723 | CX3g027200 | LOC_Os03g47016 | Os03g0673000 | - | Detail |
| C1H3g25759 | 3:24,953,373-24,960,215 | - | C2H3g09463 | CX3g026191 | LOC_Os03g47036 | Os03g0673500 | - | Detail |
| C1H3g00984 | 3:24,984,969-24,993,333 | - | C2H3g14597 | CX3g029508 | LOC_Os03g47070 | Os03g0673800 | - | Detail |
| C1H3g31854 | 3:25,015,842-25,021,446 | + | C2H3g00159 | CX3g029857 | LOC_Os03g47120 | Os03g0674300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX4g034425 | 4:22,466,081-22,466,290 | - | - | - | - | - | - | Detail |
| CX4g031957 | 4:22,467,081-22,470,011 | + | C1H4g14520 | C2H4g19435 | LOC_Os04g44110 | Os04g0521800 | - | Detail |
| CX4g034351 | 4:22,479,086-22,479,418 | + | C1H4g13540 | C2H4g20077 | LOC_Os04g44130 | Os04g0522100 | CAL2 | Detail |
| CX4g035905 | 4:22,489,802-22,493,399 | - | C1H4g14130 | C2H4g17950 | LOC_Os04g44150 | Os04g0522500 | GA2ox6, OsGA2ox6 | Detail |
| CX4g032754 | 4:22,516,744-22,517,767 | + | C1H4g23550 | C2H4g07715 | LOC_Os04g44190 | Os04g0522800 | - | Detail |
| CX4g032876 | 4:22,519,421-22,520,070 | + | C1H4g25974 | C2H4g09820 | LOC_Os04g44200 | Os04g0523000 | - | Detail |
| CX4g032188 | 4:22,520,635-22,524,145 | - | C1H4g18322 | C2H4g17435 | LOC_Os04g44210 | Os04g0523100 | - | Detail |
| CX4g033622 | 4:22,531,487-22,536,024 | - | C1H4g27685 | C2H4g30482 | LOC_Os04g44220 | Os04g0523200 | - | Detail |
| CX4g036284 | 4:22,537,186-22,537,615 | - | - | - | - | - | - | Detail |
| CX4g035705 | 4:22,539,182-22,539,352 | + | - | - | - | - | - | Detail |
| CX4g035364 | 4:22,540,559-22,540,972 | - | - | C2H4g19772 | - | - | - | Detail |
| CX4g033677 | 4:22,543,683-22,549,481 | + | C1H4g02749 | C2H4g21642 | LOC_Os04g44230 | Os04g0523500 | OsCKX8 | Detail |
| CX4g033839 | 4:22,572,860-22,573,393 | + | - | - | - | Os04g0524136 | - | Detail |
| CX4g035454 | 4:22,578,526-22,578,702 | - | - | - | - | - | - | Detail |
| CX4g035143 | 4:22,579,479-22,580,275 | + | C1H4g20304 | C2H4g21424 | LOC_Os04g44280 | Os04g0524300 | RR5, rr5, OsRR5, Rra4, OsRRA4 | Detail |
| CX4g033172 | 4:22,583,260-22,583,484 | - | - | - | - | - | - | Detail |
| CX4g034041 | 4:22,603,971-22,606,250 | + | C1H4g10194 | C2H4g00588 | LOC_Os04g44290 | Os04g0524400 | - | Detail |
| CX4g031624 | 4:22,607,983-22,611,310 | - | C1H4g06080 | C2H4g16476 | LOC_Os04g44300 | Os04g0524500 | - | Detail |
| CX4g035938 | 4:22,625,636-22,628,598 | + | C1H4g03289 | C2H4g13558 | LOC_Os04g44330 | Os04g0524900 | - | Detail |
| CX4g032796 | 4:22,629,281-22,629,647 | - | C1H4g04192 | C2H4g06209 | - | Os04g0524950 | - | Detail |