| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g03816 | 1:2,178,074-2,180,248 | - | C2H1g27793 | - | LOC_Os01g05450 | Os01g0147600 | - | Detail |
| C1H1g25686 | 1:2,181,635-2,184,291 | - | C2H1g00931 | - | LOC_Os01g05460 | Os01g0147600 | - | Detail |
| C1H1g30607 | 1:2,185,987-2,188,332 | - | C2H1g02244 | CX1g003030 | LOC_Os01g05470 | Os01g0147700 | - | Detail |
| C1H1g11928 | 1:2,191,347-2,200,110 | - | C2H1g25353 | CX1g003030 | LOC_Os01g05470 | Os01g0147700 | - | Detail |
| C1H1g17304 | 1:2,202,348-2,206,420 | - | C2H1g29480 | CX1g005120 | LOC_Os01g05480 | Os01g0147800 | - | Detail |
| C1H1g08404 | 1:2,207,371-2,211,040 | - | C2H1g30066 | CX1g006525 | LOC_Os01g05490 | Os01g0147900 | OsTPI1, OsTPI1.1 | Detail |
| C1H1g03903 | 1:2,216,879-2,229,802 | + | C2H1g25150 | CX1g001423 | LOC_Os01g05500 | Os01g0148000 | - | Detail |
| C1H1g22469 | 1:2,245,294-2,248,834 | - | C2H1g06791 | CX1g006643 | LOC_Os01g05640 | Os01g0149700 | KINt1 | Detail |
| C1H1g18521 | 1:2,250,673-2,252,104 | - | C2H1g28846 | - | LOC_Os01g05650 | Os01g0149800 | - | Detail |
| C1H1g17924 | 1:2,256,667-2,260,515 | - | C2H1g25044 | CX1g006502 | LOC_Os01g05660 | Os01g0149900 | - | Detail |
| C1H1g30008 | 1:2,265,914-2,269,572 | - | C2H1g00511 | CX1g002286 | LOC_Os01g05670 | Os01g0150000 | - | Detail |
| C1H1g15806 | 1:2,272,333-2,275,964 | + | C2H1g17834 | CX1g000079 | LOC_Os01g05680 | Os01g0150100 | OsPGGT I-β | Detail |
| C1H1g16095 | 1:2,276,915-2,277,206 | + | C2H1g21300 | CX4g035052 | LOC_Os01g05720 | Os01g0150200 | - | Detail |
| C1H1g24721 | 1:2,278,047-2,279,684 | + | C2H1g21300 | CX4g035052 | LOC_Os01g05694 | Os01g0150200 | - | Detail |
| C1H1g12773 | 1:2,281,434-2,284,860 | + | C2H1g19488 | - | LOC_Os01g05760 | Os01g0150400 | - | Detail |
| C1H1g02086 | 1:2,286,429-2,289,397 | + | C2H1g06641 | - | LOC_Os01g05720 | Os01g0150800 | - | Detail |
| C1H1g24478 | 1:2,294,882-2,297,822 | + | C2H1g05176 | - | LOC_Os01g05760 | Os01g0150800 | - | Detail |
| C1H1g14864 | 1:2,300,295-2,301,415 | + | C2H1g05176 | - | LOC_Os01g05744 | Os01g0150800 | - | Detail |
| C1H1g31823 | 1:2,309,978-2,313,212 | + | C2H1g04685 | CX1g006444 | LOC_Os01g05800 | Os01g0151200 | OsALB3 | Detail |
| C1H1g06017 | 1:2,316,041-2,320,870 | + | C2H1g05574 | CX1g002082 | LOC_Os01g05810 | Os01g0151400 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX4g034425 | 4:22,466,081-22,466,290 | - | - | - | - | - | - | Detail |
| CX4g031957 | 4:22,467,081-22,470,011 | + | C1H4g14520 | C2H4g19435 | LOC_Os04g44110 | Os04g0521800 | - | Detail |
| CX4g034351 | 4:22,479,086-22,479,418 | + | C1H4g13540 | C2H4g20077 | LOC_Os04g44130 | Os04g0522100 | CAL2 | Detail |
| CX4g035905 | 4:22,489,802-22,493,399 | - | C1H4g14130 | C2H4g17950 | LOC_Os04g44150 | Os04g0522500 | GA2ox6, OsGA2ox6 | Detail |
| CX4g032754 | 4:22,516,744-22,517,767 | + | C1H4g23550 | C2H4g07715 | LOC_Os04g44190 | Os04g0522800 | - | Detail |
| CX4g032876 | 4:22,519,421-22,520,070 | + | C1H4g25974 | C2H4g09820 | LOC_Os04g44200 | Os04g0523000 | - | Detail |
| CX4g032188 | 4:22,520,635-22,524,145 | - | C1H4g18322 | C2H4g17435 | LOC_Os04g44210 | Os04g0523100 | - | Detail |
| CX4g033622 | 4:22,531,487-22,536,024 | - | C1H4g27685 | C2H4g30482 | LOC_Os04g44220 | Os04g0523200 | - | Detail |
| CX4g036284 | 4:22,537,186-22,537,615 | - | - | - | - | - | - | Detail |
| CX4g035705 | 4:22,539,182-22,539,352 | + | - | - | - | - | - | Detail |
| CX4g035364 | 4:22,540,559-22,540,972 | - | - | C2H4g19772 | - | - | - | Detail |
| CX4g033677 | 4:22,543,683-22,549,481 | + | C1H4g02749 | C2H4g21642 | LOC_Os04g44230 | Os04g0523500 | OsCKX8 | Detail |
| CX4g033839 | 4:22,572,860-22,573,393 | + | - | - | - | Os04g0524136 | - | Detail |
| CX4g035454 | 4:22,578,526-22,578,702 | - | - | - | - | - | - | Detail |
| CX4g035143 | 4:22,579,479-22,580,275 | + | C1H4g20304 | C2H4g21424 | LOC_Os04g44280 | Os04g0524300 | RR5, rr5, OsRR5, Rra4, OsRRA4 | Detail |
| CX4g033172 | 4:22,583,260-22,583,484 | - | - | - | - | - | - | Detail |
| CX4g034041 | 4:22,603,971-22,606,250 | + | C1H4g10194 | C2H4g00588 | LOC_Os04g44290 | Os04g0524400 | - | Detail |
| CX4g031624 | 4:22,607,983-22,611,310 | - | C1H4g06080 | C2H4g16476 | LOC_Os04g44300 | Os04g0524500 | - | Detail |
| CX4g035938 | 4:22,625,636-22,628,598 | + | C1H4g03289 | C2H4g13558 | LOC_Os04g44330 | Os04g0524900 | - | Detail |
| CX4g032796 | 4:22,629,281-22,629,647 | - | C1H4g04192 | C2H4g06209 | - | Os04g0524950 | - | Detail |