| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g19764 | 3:1,330,606-1,334,329 | - | C2H3g09637 | CX3g026825 | LOC_Os03g03470 | Os03g0126300 | - | Detail |
| C1H3g31582 | 3:1,335,457-1,336,167 | - | C2H3g01245 | CX3g030498 | LOC_Os03g03480 | Os03g0126450 | - | Detail |
| C1H3g28463 | 3:1,338,762-1,339,451 | + | C2H3g24889 | CX3g031250 | LOC_Os03g03490 | Os03g0126600 | - | Detail |
| C1H3g02888 | 3:1,341,626-1,342,499 | + | C2H3g03559 | CX3g026627 | LOC_Os03g03500 | Os03g0126700 | - | Detail |
| C1H3g13225 | 3:1,345,288-1,349,052 | - | C2H3g24408 | CX3g025902 | LOC_Os03g03510 | Os03g0126800 | CIPK9 | Detail |
| C1H3g17944 | 3:1,363,757-1,364,113 | - | C2H3g27173 | CX3g025296 | LOC_Os03g03520 | Os03g0126900 | - | Detail |
| C1H3g26030 | 3:1,366,868-1,368,510 | - | C2H3g18981 | CX3g025913 | LOC_Os03g03530 | Os03g0127000 | - | Detail |
| C1H3g10455 | 3:1,368,703-1,368,945 | + | C2H3g03780 | - | - | - | - | Detail |
| C1H3g07061 | 3:1,370,739-1,373,094 | - | C2H3g10836 | CX3g025702 | LOC_Os03g03540 | Os03g0624600 | - | Detail |
| C1H3g08724 | 3:1,391,370-1,393,759 | + | C2H3g05840 | CX3g026687 | LOC_Os03g03550 | Os03g0127500 | - | Detail |
| C1H3g30951 | 3:1,394,084-1,399,068 | - | C2H3g22731 | CX3g027794 | LOC_Os03g03560 | Os03g0127600 | - | Detail |
| C1H3g04194 | 3:1,401,840-1,405,188 | + | C2H3g10932 | CX3g029550 | LOC_Os03g03570 | Os03g0127700 | - | Detail |
| C1H3g21101 | 3:1,408,304-1,415,858 | - | C2H3g19343 | CX3g028222 | LOC_Os03g03590 | Os03g0127900 | - | Detail |
| C1H3g15997 | 3:1,419,564-1,420,769 | + | C2H3g04515 | CX3g029732 | LOC_Os03g03600 | Os03g0128000 | - | Detail |
| C1H3g11304 | 3:1,422,238-1,442,796 | - | C2H3g21656 | CX3g027243 | LOC_Os03g03610 | Os03g0128100 | - | Detail |
| C1H3g22245 | 3:1,447,989-1,448,556 | - | C2H3g11243 | CX3g025297 | LOC_Os03g03630 | Os03g0128300 | - | Detail |
| C1H3g27628 | 3:1,449,997-1,451,209 | - | C2H3g19615 | CX3g029085 | LOC_Os03g03640 | Os03g0128400 | - | Detail |
| C1H3g25549 | 3:1,452,071-1,455,805 | - | C2H3g24976 | CX3g029868 | LOC_Os03g03650 | Os03g0128500 | OsPolδ2 | Detail |
| C1H3g29800 | 3:1,467,042-1,471,416 | + | C2H3g12077 | CX3g027339 | LOC_Os03g03660 | Os03g0128700 | OsCPK7, OsCDPK13, OsCDPK1, OsCDPK11, OsCDPK12 | Detail |
| C1H3g05509 | 3:1,472,015-1,473,408 | - | C2H3g19950 | CX3g030927 | LOC_Os03g03670 | Os03g0128800 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002005 | 1:1,490,503-1,491,306 | - | - | C2H1g02727 | LOC_Os01g04120 | Os01g0132766 | - | Detail |
| CX1g003338 | 1:1,501,795-1,506,018 | - | C1H1g26304 | C2H1g01357 | LOC_Os01g04130 | Os01g0132800 | OsCRS2, CRS2 | Detail |
| CX1g004881 | 1:1,510,617-1,510,775 | + | - | - | - | - | - | Detail |
| CX1g006935 | 1:1,512,700-1,515,890 | + | C1H1g25093 | C2H1g27153 | LOC_Os01g04160 | Os01g0133100 | - | Detail |
| CX1g002140 | 1:1,517,156-1,517,740 | - | - | C2H1g14337 | LOC_Os01g04170 | Os01g0133200 | - | Detail |
| CX1g002370 | 1:1,521,461-1,526,008 | + | C1H1g00222 | C2H1g09944 | LOC_Os01g04190 | Os01g0133400 | OspGlcT1 | Detail |
| CX1g005421 | 1:1,526,622-1,532,280 | + | C1H1g00222 | C2H1g04042 | LOC_Os01g04200 | Os01g0133500 | - | Detail |
| CX1g004995 | 1:1,533,647-1,535,015 | + | C1H1g18877 | C2H1g25293 | LOC_Os01g04210 | Os01g0133600 | - | Detail |
| CX1g006533 | 1:1,538,897-1,540,618 | + | C1H1g05286 | C2H1g22644 | LOC_Os01g04220 | Os01g0133700 | - | Detail |
| CX1g002225 | 1:1,542,257-1,544,424 | + | C1H1g27859 | C2H1g03551 | LOC_Os01g04230 | Os01g0133900 | - | Detail |
| CX1g006646 | 1:1,558,909-1,562,343 | + | C1H1g26351 | C2H1g29327 | LOC_Os01g04260 | Os01g0134500 | - | Detail |
| CX1g006565 | 1:1,572,903-1,574,786 | + | C1H1g03192 | C2H1g24695 | LOC_Os01g04280 | Os01g0134700 | - | Detail |
| CX1g007193 | 1:1,578,054-1,580,824 | - | C1H1g21390 | C2H1g28679 | LOC_Os01g04290 | Os01g0134800 | - | Detail |
| CX1g006983 | 1:1,583,985-1,586,178 | - | C1H1g29863 | C2H1g27423 | LOC_Os01g04300 | Os01g0134900 | - | Detail |
| CX1g004364 | 1:1,590,977-1,591,525 | - | - | C2H1g08758 | LOC_Os01g04330 | Os01g0135700 | OsCML16 | Detail |
| CX1g006461 | 1:1,595,118-1,597,658 | + | C1H8g01157 | C2H1g27780 | LOC_Os01g18920 | - | - | Detail |
| CX1g002909 | 1:1,606,956-1,609,874 | - | C1H1g00232 | C2H1g27972 | LOC_Os01g04360 | Os01g0136000 | OsHSP16.9C | Detail |
| CX1g002195 | 1:1,622,871-1,623,341 | - | - | C2H1g23929 | LOC_Os01g04390 | Os01g0136300 | - | Detail |
| CX1g001507 | 1:1,625,588-1,628,734 | - | C1H1g31675 | C2H1g20283 | LOC_Os01g04409 | Os01g0136400 | - | Detail |
| CX1g000380 | 1:1,632,130-1,644,459 | - | C1H1g05135 | C2H1g27877 | LOC_Os01g04440 | Os01g0136700 | - | Detail |